DreINT0057986 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34419633-34420085:-
Coord C1 exon
chr11:34419908-34420085
Coord A exon
chr11:34419828-34419907
Coord C2 exon
chr11:34419633-34419827
Length
80 bp
Sequences
Splice sites
5' ss Seq
GATGTATGA
5' ss Score
2.41
3' ss Seq
CTTCTTTGACATTTTGACAGGCG
3' ss Score
5.81
Exon sequences
Seq C1 exon
GACAGATGGTATACTGTCTTGTCTCATTCGGGATGGAGCTTCATCCATGGAGCAGGAAAAGAAGTGGTACATGTTTGACGGGCCTGTAGATGCCGTGTGGATCGAGAACATGAACACAGTTCTGGATGACAACAAGAAACTGTGTCTGAGTTCCGGAGAGATCATCAAACTCTCTGAT
Seq A exon
GTATGAGAGTTTCTAGATAATTGTCTGTATGTGTTGTATCGCCTCATAATTTTTAGTTTGCTTCTTTGACATTTTGACAG
Seq C2 exon
GCGATGACAATGATGTTTGAGGTGCAGGATTTGGCGGTGGCCTCTCCTGCCACAGTTTCTCGCTGTGGCATGGTGTATCTGGAGCCGAGCATTCTGGGTTTGACTCCATTCACAGAGTGTTGGCTCCGAACAATCCCTGACATGTTTCGGCCCTACGCGGATCAAATCAACTCGCTCTTTACAAGGTTCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(40.1=100)
A:
NA
C2:
PF077289=AAA_5=PD(15.0=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAGATGCCGTGTGGATCG
R:
GCTCCAGATACACCATGCCAC
Band lengths:
180-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]