MmuINT0050522 @ mm9
Intron Retention
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32099909-32101075:-
Coord C1 exon
chr14:32100898-32101075
Coord A exon
chr14:32100104-32100897
Coord C2 exon
chr14:32099909-32100103
Length
794 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
ACATTCTACCTTGGCACCAGGCA
3' ss Score
5.05
Exon sequences
Seq C1 exon
GACAGATGGAATTTTCTCCTCCCTCATCCGGGCCGGGGCCATCGCATCTGACACCAACAAGAAATGGTACATGTTCGACGGGCCGGTGGATGCCGTCTGGATAGAGAACATGAACACCGTGCTGGATGACAATAAGAAGCTGTGCCTCAGCTCTGGGGAGATCATCAAACTCACAGAG
Seq A exon
GTGTGCTGCCCGCCCACCCACCTGTTCTCTTCTGCAGCTAGCCGGCTCTGGAGTCTGCGCCATGCCCAACACACCAAGGAGCCCGATGACAGGACCCTGGGCCCCACCCCCAGTACCCCCTCCCAGCCCTGAATCCCCTTCTTGGAGCCACGTCCTATGTAGCTGTCTTTCAGAAGGCCTGCTTTCTGTGGTGTCCCAAGCCTAGGGCCATAGGAGCTGCCCTGCTGGTCCCCTAGCTTATGCTGCCTCCTGCCTCCCGGGTCCACTCCACTCTTGGCCATGATCTGCCCTTTTTAAAGCCAGTTATAGCGGTGTGTTCAGGGGCTGGGGACTGGTAGCACAAACCTGACCACAGGGGCCCTGATTGGTGTATGTAGCTGAGTTCTTGAGAAAGCTGGCTGTGGCCTGGGCATGAGAGCATTTCAGACTGTATATACACTAAACCCCTGAGAACATGTGGCAGTCAGTGTGAGCCTGTGTGTGTGACTGGGGCTATGAAACAAACAAAACAAACAAACAAACATATTTCCTGTCTGGTTCGTCAGGCTCTTAGGAACTCCACATTAGCCAGAAAGTCAGCTTTGTCTCTTCCTCGGGGCTCTGTGGAGGGCCACATTATCGAATGAGGATTCAGGGATCCCCGAACCTCAGCTGCAGCCCCGATCCTCCCTATGAGAGCCTGCCTAGAGAGTCTTTTGGCAGAATGGGCAAGCAATTCCCCCAAAGTCCCATATCTCTTTTCCTTACTTGGGGGCTGCTAGCTGTCCCGCTTACACATTCTACCTTGGCACCAG
Seq C2 exon
GCAATGACCATGATGTTTGAGGTGCAGGACCTGGCAGTGGCCTCACCAGCCACAGTCTCCCGCTGTGGCATGGTGTACCTGGAGCCCAGCATCCTAGGGCTCATGCCATTCGTTGAGTGCTGGCTAAAACGTCTCCCTGCCATAATAAAGCCCTACGAGGAACAGTTCAAGAGTCTCTTTACCAAGTACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-Dnahc1:NM_001033668:37
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(40.1=100)
A:
NA
C2:
PF077289=AAA_5=PD(14.3=32.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTCCTCCCTCATCCGGG
R:
AGACTCTTGAACTGTTCCTCGT
Band lengths:
343-1137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: