DreINT0058036 @ danRer10
Intron Retention
Gene
ENSDARG00000077384 | dnah11
Description
dynein, axonemal, heavy chain 11 [Source:ZFIN;Acc:ZDB-GENE-100922-8]
Coordinates
chr16:19563730-19566061:-
Coord C1 exon
chr16:19565850-19566061
Coord A exon
chr16:19563964-19565849
Coord C2 exon
chr16:19563730-19563963
Length
1886 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
3' ss Seq
ACAATCTTTCCTCCAACAAGGCC
3' ss Score
5.52
Exon sequences
Seq C1 exon
CTTTGCAGGAAGCTAGGGCTATAGACCTCCATCTTCAGCCTCTAGGATCTTTGCTGTCTAAATTGGAAAAATCGGAGTTTCCATCTTTCCCTGCTCTCATTCCACCAGTCTTTCATCTTATATTTCTGGTCTGGACTCACTGTTCATTCTATCGTTCACCAGCACGCATTGTTTCTCTGCTGCAGGAGCTCTGCAACTTCTTCATTCAGCAG
Seq A exon
GTTTGACACATGTGAAGAGTCTTCTAATATATGCCTAAATGTGCGTTATTTGGAAATGTTGCTTTACTAAAAAAAGAAACTACTAAGTTTTTAAAAACTAAATCAATAAAATATATGTAAAGTTTATGTAAATTTCATATAATGGATAAAAATACATTAAAAAGAATTCCAATGTTTTCCCTGACAATAACTTATGTTATTTAAATACAAACATACTTTTTAGATAACTGTCACAAACAATTTTAATAACATTGAAATCAAGTAAAGTGCCTTCTTTATTGTTTAGTCATGTAACAATTGTGTAGTGGTCATATGCCTGGTTAGAACAATGTACTGTGTTTCATTATTTATTTTTATAATATATTATCATAACTATTTAAATTCATGTATTGAGGTAGTGCCAGGGGGAGAGAGTTCCATAGTGTGGACTTCACAACAGAAACATCCCTGCCACTAATTGGTGAAATGCTAAATATATGGACTAAAATGTCTGGGCTCACGCTCTGAAGTTTGGTGTGATTGAGTAAGAATAGGGCGTCAAGGTGGCACAGTGGTTAGCACAATCGCCTCACAGCAAGAAGGTTGCTGAATTAAGCCCCAGCTGGGCCAGTTGGCATTTCTGTGTGGAGTGCATGTTCTCCCCGTGCTAGTGTGGGTTTCCCTTCGGGTGCTTCAGTTTCCCCCACAGTCCAAAGACTTGTGCTATAGATAAATTGAAAAGGCTAAATTGTCTTTAGTGTATGTGTGTGAATGCAAGAATGTATGGGTGTTTTCCAGTGTTGGGTTGTGGCTGGAAGGGAATCTGCTGCGTAAAACATGTACTGGATAATTTGGCAGTTCATTCTGCTGTGGAGACTCTTAAAGAAAAAAGGGAGTAAGCCTTTAACTAAAAGAAAATGAATGAATAAATGAGTAAGAATACAAGATAAAAGGTAAATTGGGGTTGAAGCAAGACCATATTTGTTATTATTTATTAAACTTGGGCAATCTCATTTTTATTCACATTTACTCTAAGAAAGTTAGTTTAACCCGTAATTCAGTCTGACCAACAAGCTGTATAAATTTTGCGGTAACACTTTACAATAAGGTTCATTAGTTAATGCATTTACTAACATAAAAAAATCATGAACAACACTTGTACTTCATTTATTAATCATAATTAAACATTTACTAATGCATTATTATCATTCAAGTCTGTGCTTGTTAACATTAGTTAATGCACCATGAGTTAACATGAACTAACAATGAACAACTGTATTTTCATTAACTAACATTTATTAACATGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTCAATGTTTGTTCATTGTTAGTAAATGCATTACTTAACATTAACTAATGAACCTTATTGTAAAATGTGACCAATTTTGCATATTGTCCGCATAATATTGATTATAAAAACTATGATAGTGAATAATTTGTCAGAAACGCATTATCTATTGTAAATAATAAATAAGAGCAGACCAAGGAAAGGACCTTGGGGAACCACCCTCTTTTAGTGAGTTTTATCATTCCTGAGATAATCTTTTAGTGTTGAACAAAAGAAAGAAACTCGAACCGGTTTGCAAGAAATAGAGGCTGAGTAAAGTGTTACGTAATTATTAGTTTTAAGTCTCTTAACATTTTTTTTGTGTCATTGACCCACACATTAATTAACATGTATAAAAATGATATTTGGCCAAGTTATTAGATTATTGTTGTTGTTGTTGTTGTTTAAGCTTTACATTCAGGGACATTGGGAAGGCATATTATTGGAATAGAGTCAAAATGTCCTTGTTAACCAAAACAACAATCTTTCCTCCAACAAG
Seq C2 exon
GCCTCTTCACATCTCAGGGCAGATGAGCTGCTGAAATCAGAGACTGAAGATGCTTTGGAGAAAATACAGACTGTATTGGGAGTTTTTGGATGTGTCAGGGAAACATTTAAGACATACAGACAGAAAGTGGCTGCTTTGACCAATCATTATTCTTCAGCAAAGTGCTGGGATTTCCCTTCGGCTCTTGTTTTTACTCGATTTGATAGCATCTTGGCTCGTGTTTTACAGTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077384:ENSDART00000148294:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(12.0=100)
A:
NA
C2:
PF083857=DHC_N1=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCTGCTCTCATTCCACCA
R:
ACACGAGCCAAGATGCTATCA
Band lengths:
347-2233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]