DreINT0058066 @ danRer10
Intron Retention
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19607356-19608420:-
Coord C1 exon
chr23:19608269-19608420
Coord A exon
chr23:19607495-19608268
Coord C2 exon
chr23:19607356-19607494
Length
774 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TACCTTTCATCTGTACTTAGGCC
3' ss Score
8.54
Exon sequences
Seq C1 exon
TTCAAAGGAAAAGGACGTTGGGTGCACTGGAATGAGTCGATCAGTAATGCACCATTAGGAGACAAGAATACTAAAGTACAGGATATCATTGTCCCCACCATTGACACTGTGCGATACACTTATCTAATGGACCTCTGCATTCAATATGGGAG
Seq A exon
GTGAGTAATTTGTTTTTAATATCTTGTCAAACATTCTGCAGCTCTCAAACCTTTTACATTTCTTTGCTTTATTAGGATCATCTTAGGTCAGAAAAAAAATGAAAATCTCTGTAAATATAACAGAAATTATATATATATATATATATATATATATAATTATAATTATATATATACACACACACACACACACACACACACACACACACACACACACACGCACACACATTCACCTTAAAAACACACTCAATTCAATTCATCAAACAAGAAAGTATCTGGAAAACGCACAATATCACATAAAGTACTTACACAAATGCATACAAACCATACAAAAAAATAAAAAAACTTTTACATGCTTAAAACTAAATGTTCAGTAAATGTTTTTCAATGTGAGGAATTGTTTACAAAAGGATTTTTTGACAACTCTCTGCAGTTGAAACATTGAAATAAGACATATTACATAGTACTTGAGACTTAGAGATGCGCAATGGTTAATTTGCCCATCAGTGTTTAGACTTTCAGCAGTGAAAATTAAACCACGCTGAACTGAACTTAACTGAAATTTAGCTCTACAATATACATTACAAATATGCTATAGAAATAAAGATGAATTTAATTGAATTGAATAAAATATTCCCCCCAAATTTTAGAACCACTGCATAAAACCATATCTTTTTATTCACCTTAAATGTAATTGTCAAGCTATTGTTTTTGATTTGTATTGTTTAATTCAGCCAACCTAATCAGAAATTGTTCTTACCTTTCATCTGTACTTAG
Seq C2 exon
GCCTTTGTTGCTCGTTGGCCCCACTGGCACTGGAAAATCTGTTTATGTGAAAGAAAAATTGATGAACAATCTCGACAAAGACCTCTTCCTTCCCTTCTTCATCAACTTCTCAGCTCGCACCAGTGCCAATCAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987:ENSDART00000134012:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(11.4=60.8)
A:
NA
C2:
PF127752=AAA_7=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAAAAGGACGTTGGGTGC
R:
CTGGGTCTGATTGGCACTGG
Band lengths:
287-1061
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]