RnoINT0048749 @ rn6
Intron Retention
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2459177-2460469:+
Coord C1 exon
chr16:2459177-2459328
Coord A exon
chr16:2459329-2460330
Coord C2 exon
chr16:2460331-2460469
Length
1002 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
CACTTACTGTTTCCATAAAGGCC
3' ss Score
6.1
Exon sequences
Seq C1 exon
TTAAGAAACCGAGGTCGCTGGATCCATTGGAATGACTTAATTAAAAGTTCTGATATAGAAGACAGACGTACCAAGATTCAAGATATTATAGTCCCTACAATGGACACGATTAGATATACTTTCCTAATGGATTTGTGCATTTCCCATGCAAA
Seq A exon
GTAAGAAACTCTAAACATGAGTTCTAAATGTAACAGTGCCTTTCTAATAAAACGTCAGCCTGTTTTAGAGCAAACTTTGAAGTCATGGTCACCGAGTTTCAGGCAGCTGAGACAGTGTCTGGGAGCTAATTAACATGTTTTAAATGACATCTAGTGTTATTGGAGAACCTAGAATTCAGCTTTTTTTTTTTATTACTCCAAGATTTTAACAGAACGATAGTACATTGCCTCTTAAGTCACCCAAACTCACTTGCAGTGTTATTATTGAAAAGCTTTATACTTTTGGGTAGGACATGGCTCGGTCAGGAAAATCCTTATTTCATAAGCATGTGGAACCAAACTCCATATAAAAAACAGTGAGTTCAGGTTGGTATAAAGCCAGAAGCATGGTGCACACTTGTAATCACAGCCATAGCAAGACGGGAGACAGACAGGCATATGGGCCAGCTAGCTTCTTGTAGCTCCTAGACAAACTTCCAGGGAAGAACCCTGTCTCAAACAAAAGGAGGAAATGCCTAGGATATCACCAAAGATATCTCTGAGCTCCATACATGTTATGCCCGTGCCTACCTGCTCATCAATATACACTTACAGAGAAGGGTGCACAGACAGGAGCGTGCACACATGTGCACACGCACGCGCACACACACACACACATGCACACGCACCCACTCACACACACACACACGTGCACACACACACGCACACGCGCACACACACGCACCCACTCACACCACAAGTTTATATATTTTACATACGGGTTCAGTGCCTCCAGGCTAGGAGGGCAGTGGCCTCAGGCTTGCATGGCGAGTGCTTTTACCTGCTGAGCCATCTCCTTGGCCCTTCTTTTACTGGTCTCTCATGCACTGCTGTAAGCATGGGGAGTATTAGAAAGAAATGACTTGACTACTGTTTAAGGTTTTTAAAATATGTATTTGAGTTTCTTTCCATAAAAATGCTTTTCTACCATTTTGGACTATGTCACTTACTGTTTCCATAAAG
Seq C2 exon
GCCGCTGCTCTTTGTGGGTCCCACTGGCACAGGAAAGTCAGTGTACGTGAAGGATAAGCTAATGAATCACTTGGAAAAGGGAAAGTACTTTCCTTTCTATGTTAATTTCTCCGCACGGACCAGTGCCAATCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865:ENSRNOT00000079215:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(11.4=60.8)
A:
NA
C2:
PF127752=AAA_7=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGAAACCGAGGTCGCTGGA
R:
GAACCTGATTGGCACTGGTCC
Band lengths:
288-1290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]