DreINT0058091 @ danRer10
Intron Retention
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19591644-19592042:-
Coord C1 exon
chr23:19591902-19592042
Coord A exon
chr23:19591803-19591901
Coord C2 exon
chr23:19591644-19591802
Length
99 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
ATGAACTTGATCTTTTCAAGGGC
3' ss Score
6.27
Exon sequences
Seq C1 exon
CAACAAATCAAAGAATCTAGAGAAAAGACTCCGATACCTGATTGATTATTTCACCTATAACCTCTACTGCAACGTGTGCCGTTCGCTCTTCGAGAAGGACAAACTCCTCTTCTCGTTCCTGCTCTGTTCTAACCTACTGCT
Seq A exon
GTAAGTTCAAACAAATCAGGCTTTGTGTCACTGTTATATTACTGACGTAGTAATATATGGTGTTGAATAAATCTGTGCAATGAACTTGATCTTTTCAAG
Seq C2 exon
GGCTAAAAAGGAGATTGAATACTCTGAATTTATGTTCCTGCTCACTGGTGGTGTGGGACTGCAGAACAGCATCCCCAACCCTGATCCAAACTGGCTCCCTGACAAGAGCTGGGATGAGATTTGCCGAGCCAGTGATCTTCCAGCCCTTAATGGCATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987:ENSDART00000134012:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0302810=Dynein_heavy=PU(4.9=61.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTCTTCTCGTTCCTGCT
R:
CACTGGCTCGGCAAATCTCAT
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]