DreINT0058097 @ danRer10
Intron Retention
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19588442-19588803:-
Coord C1 exon
chr23:19588663-19588803
Coord A exon
chr23:19588580-19588662
Coord C2 exon
chr23:19588442-19588579
Length
83 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AACTACCTATTGTTTTATAGGTC
3' ss Score
9.23
Exon sequences
Seq C1 exon
TTTCCAGTGACCATCTTGCAGAATGGGGTAAAGATGACCAATGAGCCTCCCACCGGCTTGAGGTTAAACCTGTTGCAGTCGTATCTGTCTGACCCCATCTCAGATGCTGACTTCTTTGCAGGATGTCCTAAGAAGGAGCTG
Seq A exon
GTGAGTGGAATGCCAGTTTGTGGACTTTTGTTGACTGTGCCTCCTGTTTCTTTATGTAGTTGTAACTACCTATTGTTTTATAG
Seq C2 exon
GTCTGGGAGAAGCTCCTGTATGGGGTTTGTTTCTTTCATGCCCTTGTGCAGGAGAGGAAAAAGTTTGGGCCATTGGGATGGAACATTCCATATGGGTTTAACGAGTCAGACCTACGCATTAGTATTAGACAATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987:ENSDART00000134012:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.8=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCGGCTTGAGGTTAAACC
R:
CCATCCCAATGGCCCAAACTT
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]