GgaINT0021620 @ galGal3
Intron Retention
Description
NA
Coordinates
chr12:8892393-8893984:-
Coord C1 exon
chr12:8893844-8893984
Coord A exon
chr12:8892531-8893843
Coord C2 exon
chr12:8892393-8892530
Length
1313 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTT
5' ss Score
4.74
3' ss Seq
CTGTTCTGTTTTTCTCAAAGGTA
3' ss Score
10.11
Exon sequences
Seq C1 exon
TTTCCAGTAACCATTCTACAAAATGGAGTGAAGATGACAAACGAACCTCCTACTGGCCTCCGACTAAACCTTCTTCAGTCATTTCTTTCTGATCCGATTTCTGATCCAGCATTTTTCTCTGGATGCCCTGAAAAGGAGCTG
Seq A exon
GTACTTTTCTCTTCTCTTGATCTCTTGACTGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTCCTTTTTTGTTTTGTTTATGGTTTGTTTTTGTTTTATTCAGTAGATGCAACCAATTTCTTTCCAGTGAATATCATAATGTAAAGTGACTGTGAGTTTAGGTTTTGGAATGATACCACGATACTATTCTAAACAGGAGCATGTCTGAAGCCAAAACTTCCTTTTGAAAGTGCAAAATTAGGATAAATATAAGCAGAAGCATTATCATTGTTGAGATGCTAAGCAGTCAGATCCTTTTCTTGCTATCAGGGATCAGTGCTGCATTGCCTATATCTCTTACTGATAAGTGAGAAACCACTTAGGTACTCCTTATCTGTGAAGGAAGTGAAGAAACAGTGGGATTACTTAGGGATGAGTATTGTAATCGTTGTAGCTATGAGTGGATTCATTTAAGGACTTACATTAAACAATACAACTATTTTATATGTTTGTCTAGTGAGGCTTAAAAATAAATATATTTGTATTCTTATGAAGTCAGCCTCCCTTCACATAGAAGAAAAAATGGTGTATAAAACTGTTTAATATTTGCTTTGGTGATATGGACAGTGGGACTGAGCACACTCTCTGCAAGTGGTGCTGTTGATGTTACAGAGGGAAGGGATGCCACCCAGAGGGTCGTTGACAGGCTTGAAAGATGCAAACATCATGCAGTTCAACAAGGTGAGGTGCAAGGTGATGCACTTGGGTCAGAACAGTCCCCAGCTTCATTGCAGTCTGAATGATACATAAATTGAGAACAGTCCTGCAGAAAAAGACTTAGGTGTTCTAGTTGTTGAAAAGCTCAGTATGAACCAGCGATGTGAACTTGCAGCCCAGAAAGCCAAATGTATTCTGGGCTGCATCAAAAGAAGAGAGACCAGCAGGTCAAGCAAGGTGGTTCTCCTGCTCTATTCCACCCTTCACTAAGACCTCACCTGGACTACTGTGTCCAGCCCTGGCGCCCTCAGCAGAGAGATGTGGACATGTCAGAGCAGGAGCTGAAGAGGGCCACAGAAATGACCAGGGGGCTGAAACAGTTCTGCTGTGAAGAGAGGCTGAGAGAATTGGGGTTGTTTAGCCTAAAGAGGACTATACCTTCCAGTACATAGAGGAAAGATGAGAGATTCCTTATCAGGGTTGGTAGTGACAGGAAGAGGGTAATGGAGATGGAGAGTCGTAATCAGATGGTTTGTTCTTGGTATAAATTACTCAACAGCATGAGCATAAAGTCAGTTAACAATACTTTTCTGTTCTGTTTTTCTCAAAG
Seq C2 exon
GTATGGGAGAAACTACTCTTTGGAGTCTGTTTTTTTCATGCTCTTGTTCAGGAGAGAAGAAAATTTGGGCCCCTTGGTTGGAATATACCCTATGGGTTTAATGAATCAGACTTGCGAATTAGTATCAGACAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601:ENSGALT00000008986:65
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAATGGAGTGAAGATGACAAACG
R:
CTGCAGTTGTCTGATACTAATTCGC
Band lengths:
262-1575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]