DreINT0058160 @ danRer10
Intron Retention
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25183417-25185092:-
Coord C1 exon
chr9:25184924-25185092
Coord A exon
chr9:25183544-25184923
Coord C2 exon
chr9:25183417-25183543
Length
1380 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GACATGTCCTTCTTCTACAGGTG
3' ss Score
11.47
Exon sequences
Seq C1 exon
GTGGTTTTTGTGGATGATGTGAATATGCCAGCAAGAGAGACGTATGGAGCCCAGCCTCCAGTGGAGCTTCTGCGGCAGTGGCTTGACCACTGGAACTGGTATGACATGAAGGACTGCTCCATGATCAACTTAGTGGACATCCAGATCATGTGTGCTATGGGTCCGCCTG
Seq A exon
GTGAGCTCACGTCACTTTTTTTTCAGAGCAGACATTAAGAGCAAATGGAGTTCTCAGAAATGTTTGCATATGTACACTATCGGTCAAATTTTGGTGTCATGTTTTTTTTTTTTTTTATAAAATTTATTCTGTTCATCAAGACAGCTTTTATTCAAAGTAAAAAAAAAATTGTTAAACTGTTAAATATTTATTAAAATTTTAAACAACTGCTTTCCTATTGTATGTAGTTTGAATGAAGTAAAACTATTACTCCAGTCATTATTGTGTTTATTACTATTACCATTGACAATAATTATATTGATAATAATAATAATATAATAATAATATAATATAATAATAAAAAGATTAATAATAATAATAATAATAATAATAATAATAATAATAATAATATTAATATTAATATTAATATTAATATTAATATTAATATTAATAAATATTAGAGTGATTTGTGAAGGATCTTGTGACTGAAGACTGGAGTAATGAAGCTGAAAATTCATCTTTAAAATCACTGTAATAAATTAATAAATTAAATAATAAACTACTAAACTTTATTTTACAGTGCAATAACATTTCACAATTTATTCTGTATTTTTGATTAAATAAATGCAGCCTTGGTGAGCAGGATAAGCTTATTTTAAAACATTTAAAATCGCACAGACTCCAAACTTTTGACCGGTAGTGTTCATTAAAGAAAACACTTAATACAAAAGAATCAACCAATGTTAAACATTATTTATCACAGTAAAATAAATTGTGAAAGTAAAGTTTTAGGAGGGCGGTGCAGTTTGTAACATTAAATGTGTTGAACATTGTGTATACAGTAGGCATGTGAAGATAACCAGTTTTAAGGTTTACCATGGTTTTGAAAAGTCAAGGTTTTAAAACCTTTAGAATTTTCTTTCATACTCTTCCTAAGGTATTTGGTTTTGTTGTTTTTTTGTGTTTTTCAAGACAATTTTATTTTGTTTTTTTAGTCCATGATTCAGGAAACATCTGAATTACAAATATTAAGCAACATCCAGCATGCTGTAGAGCTGAACAGTGCAGTGGCTTACTTTATATCCAAAGAAAAACAAAGATATCAAACATCCTGTCTTTAAAAGTAATTAAGACAGCAGAAGTAATTTAATGTTTGCTGACATTTATTGTTTTAAAATTTATATATATACCATTTATATATATACCATGTTGAATGCAGAAAAAGTTGTTTTTTACCCAGACATCTAAAAAGAATTTTTTTTTAAGCAGTAATTAAAATACCCTGATATCATGAAACCGTGATATTTTTACCTGAGGTTATCACACCGTCAGAATCTTATACCGACCCATGCCTAGTATACAGTTGTGCTTGTGAATGTCTGACATGTCCTTCTTCTACAG
Seq C2 exon
GTGGAGGTAGGAACCCCGTGACTCCTCGGTTTTTACGGCATTTCAACACAGTGACTATTAATGAATTTGATAACAAAACCATGTTCACCATTTTTTCAAGAATTCTGGACTGGCACTTAACCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165:ENSDART00000137131:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.4=100)
A:
NA
C2:
PF127752=AAA_7=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTTTTGTGGATGATGTGA
R:
TATGGTTAAGTGCCAGTCCAGA
Band lengths:
294-1674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]