GgaINT0050153 @ galGal3
Intron Retention
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10712705-10714835:-
Coord C1 exon
chr7:10714667-10714835
Coord A exon
chr7:10712832-10714666
Coord C2 exon
chr7:10712705-10712831
Length
1835 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
TAGTGCTTTCTAATACTTAGGTG
3' ss Score
4.71
Exon sequences
Seq C1 exon
GTTGTATTTGTAGATGATGTTAACATGCCAGCCCGAGAGGTCTATGGTGCTCAACCTCCTGTTGAGTTACTACGACAGTGGTTAGATCACTGGAATTGGTATGACCTTAAAGACTGCTCAATGATAAAACTTGTAGATATTCAGATTGTCTGTGCAATGGGACCACCGG
Seq A exon
GTAAGAGATGTATACTATACATTTTTTTCCTCTGTTTCCTTGGTTTTCAAATGCTAAATGCTTACTGCTTAAGTTTTGGCCTTTCTGGCTATGGATAGGACTCAGGGAATGTTTTCCTTGTAGGAAATATGAACAGTGGTCAAATTAAAGTAGTTGAGGAGTAGGAAAGTGACTACACAAGCCTAACAGGAGGAAACATTGCTTTGCAGGAAGACAGGAGTTTATCTGAACAGTATTTTTGAAAAATCTTTTGGGCTAATGAAGCCTTGTTTGAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAGCACTAAGTTGAGGTCTGCAGCAGATAAACCTTACTTTACTTAGCAAACAAATGAAGTAATCACATGATGTCAGGAGATCATCTTTCTCATAGCCTGTGTAGATAAAGATTATATATATGTAATGTACTCCAACAGTAATGCCTCCTATTTATTTCTATGGAAAATACAACAGATGCAAAGAGCACAGTAGCACTGATATAGGAAATTCTCAGGTACAAAATACTGCTGTTCAACGCAGTCACTGCCATTATCTATGCATTTTTGGCAGCAATGAGCAAGAGCCTGTATGCTCATTAAAAAAATCTGCATCAGCATATGACAGGCTGTCACCGTTGCTGAAATGCACCACCCACCACTTCACTGTGCTCACATCCATCCACTGTTTGGTTACCATAAATGTTCTGTAAGCATCAATGAATGTCAATGGGTGCAATTTTTTTTCTGCATATGTTTGGTGACATACCATTGCTTCACATGCTCTTCCACATCAGATGCCATTGTCAGACTGCCCCTCTGCTCTCATCTGTTGCATTGCAACAAAATGTAGTGGAATATTGGTTGGCAGATTCAGCCTCTACTGCCATACCACCAATATCTGCCACTGCTGTTGTGGGGTAACGTAATAAAATGGGAGTCAGTACGTCAAGAAAAGTCCCTTAGCTGCAGCTGCGCACTCTGCCATCTCCCCCCATCCTCTTTAGGATTTTTTTTCATCATGTCATATGATATGGAATATTCTCTGGCCAGTTTAGGTCAGCTATCTTGGTTCTATCCCCTCTCAACTTCTCGTGTGCCTGCAGCCTCCCTCACTAGTAGGACAGTGTGAGAAGCTGAGAAACTGAAATGTCCTTGGCTCTGTGCAGCACTTTTCAGCAACAACTAAAACACTGTTATGTACTCAACAATATTTTTTTTTCTCCTGAAGCCAAAAAATAGCATTATACCAAACACTATGAGGAACAAGAGAAAATCAACTCCCAGCTGATACCAGAACAGAAGTGTTCATCCAGAGTTCAAAGCACTTTATCTAAATGATCAGTCTGTGGAGCTGAACAGAGGGAAACTGTGAAAGAAAAGCCCAAATCAATTGCATATTTTACTTTTTAAAAAATATTTTTTACTTAGGCCAAATCTTGGAGGCACTTTTTCTGTAAAACCTTCCTTTGTTCCCATCTCAGGCTTTTTTACGTGGGGATACATTCAAAATCAAGAATATACATGTAAAGTTTATGATAAAAACTTTCTCCTGCAACAGAAGTGTGGTTAAAATAACTTCAAGTCTATCTATCTATAACTTGACCATTTCAGTCTTTATTTTGCATGCTATCTATTACAAGAGAACACCGTCAATATTTTTACTGCCTTGTTGCTTTCAGTAAGCTTGTGACACAATGCAGTACTTTTCGTTGTGGCACTGCTAGTTGAATGAAAGATAAATATTAAAAAAAATATTGCTAGGCTTTTACTGTTTTACTCTCTCTTTTTTTTTTTTTTTTGTTATTTACAATAGTAGTGCTTTCTAATACTTAG
Seq C2 exon
GTGGTGGTCGAAACCCAGTAACACCACGATTCTTGCGACACTTCAATAAAATTACCATTAATGAGTTTGATGATGAATCCATGTACACAATATTTTCTAGAATCTTAGACTGGCATCTGACTATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841:ENSGALT00000012727:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.4=100)
A:
NA
C2:
PF127752=AAA_7=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGATGATGTTAACATGCCAGCCC
R:
CATATAGTCAGATGCCAGTCTAAGA
Band lengths:
286-2121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]