DreINT0058171 @ danRer10
Intron Retention
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25171421-25172431:-
Coord C1 exon
chr9:25172277-25172431
Coord A exon
chr9:25171612-25172276
Coord C2 exon
chr9:25171421-25171611
Length
665 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
CCATCTTTATTGTTTTGTAGTGT
3' ss Score
7.69
Exon sequences
Seq C1 exon
AAATGCAAGGAGGTGGCCCTTGATGATTGACCCTCAGGGCCAGGCCAACAAGTGGCTGAAGAACATGGAGAAATCCAACAGTCTCCACGTGATCAAGCTCAGTGATGCCGACTTTGTGCGCACACTAGAAAACTGCATCCAATTTGGCACTCCAG
Seq A exon
GTTAGAAATATTGACAGCTTTTTTAAACATGTCATATTACCATATGCAATCAAGCAGTTTTTATAAATGGTTTTGGTCCAATCAAAAAATGTTAAATTAACAAAGGATTAACAAAAAACTAATTGTGCAATACCAATATATCTCCCCAGGGGTCCCCCTCTACCATAAAAAAAAGCACAGACACATCAATTAGATCCAAACTAGTGAATGTTACCTGTTGATAAATGCACACATACTCTCGTTTCTACCTAGAACAGAATAGTTCCCTCTGTATATAACATATGAAGCCTGAAAGCACAATTACAATCTAATTTTGCACTATTTAATGCAAGGCCAAGGGGTGGGCAATCACCACAACATGAGATATGCAAATGAGCAGAGAAATCTGGCCTTAGGTGTCAGTGCTTCTTTTGTCTATTGTTGTTTTGTTACCTTTCTCCTCTAGGAGTTGCACTTCACTTATTAAATTATTTTTGTTGTTATTGTTTATTTATATATTATTAGGATTTTTGCACTCTTTTAGTTCTCTACGTCCTGCCTATTTTTCTTGTGAATAAATATTTAGTTATTATTATTCTTATAATTAGTAGTAGTATTAGTAGTAGTAGTAGTTATTCAGTTATTTTCTTTTGTATCTTCAATCATCCATCTTTATTGTTTTGTAG
Seq C2 exon
TGTTGCTGGAGAATGTTGGGGAAGAACTGGACCCCATACTCGAGCCCCTGCTGCTGAAACAAACTTTTAAACAGGGTGGCAGTGTCTGCATTCGGCTGGGTGACTCCACTATTGAATATGCACCAGATTTCCGCTTTTATATAACAACTAAGTTACGAAATCCACATTATCTACCTGAGGTCTCCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165:ENSDART00000137131:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(22.6=100)
A:
NA
C2:
PF127812=AAA_9=FE(27.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCAAGGAGGTGGCCCTT
R:
TTGACGGAGACCTCAGGTAGA
Band lengths:
345-1010
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]