GgaINT0050164 @ galGal3
Intron Retention
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10693213-10695147:-
Coord C1 exon
chr7:10694993-10695147
Coord A exon
chr7:10693404-10694992
Coord C2 exon
chr7:10693213-10693403
Length
1589 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
ACTCTTATGTTACATTGAAGTGC
3' ss Score
3.39
Exon sequences
Seq C1 exon
TAATGCAAGAAGATGGCCTCTTATGATAGATCCTCAGGGTCAAGCAAATAAATGGATAAAGAATATGGAAAAAGTCAATAACCTGCATGTAATCAAGCTCAGCGACCCTCAGTTTGTTACGACACTGGAAAATTGCATTCAGTTTGGCAGTCCTG
Seq A exon
GTAAGTTACTGAATAATGAAAGTGTAAATTACAGAAGAAACTGGAGAGGGCATGATTAACTAAAAAATGGAACTCCAGTGTCAAATGGTTCTCTTTCAGAATCAAATTATAACTACATAGTTGATGTCCTCGATGTGGGTTATAAGGTTTCTTAGGAGAAAATGATTCTAATCCTCAGTTTAATTGGTATTTTTAATTGCTCTGCAAGATCTATCACATCTTTATTTTCATGTTACGTTCATTAGATTTCTAAAAAGTAATGTTGTTTCTATTTATGGCTTTTTAAGAGCATGAATTACCAGATTGCTAGGCTGTGATCATTTAATGATTCCTGGATTCTGTATAGTAGTATTACTGCAGCCACCATATTGTTGTACCCTCAAACATAAAGAAGTTAGTTAATAGAATACACAGTGATAATTGCAGCTAATTTTAATGGATAACGAGTTCAGGTAAAGAAATAGATTGTTTATTCTGTTTTTTCTTTTTCGATTTTGATTTTCTTATAGTTTTACATTGGACTTGGATACTTGAAGAATTCCACCACAGTGGCGATGATATCAGATCTGCCGGTCTACTGGCCGTCGTTTTACATTTCGATAAGCCAGGTTAACCTGCATTAATGAATCGGCTGCAGTACCCGGGAATTTAACCCGCCTAATGAGCGGGCTTTTTTTTGTGATCCAAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGATACCAAATACTGTTCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGATGGTGAAAGGCGGACAGGTATCTGGTAGCGGCAGGTCGGACAGGAGAGCGCACGAGGGAGCTCAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTTTCCTGATTACTATTTTTTATTTTTCCTGCGTTGCTTACAAATAACATGCATATTGGGAAGAAAAAAAAAAAAGTACTATAAATGCCAGGATAGCCCTACTAACTCTTATGTTACATTGAAG
Seq C2 exon
TGCTTCTTGAGAATATTGGAGAAGAACTGGATCCTATTCTAGAGCCACTCTTGCTCAAACAGACATTTAAGCAGTCAGGAAGTATATGCATTTGCCTCGGCGACTCCACTATTGAGTATGCTCCCGAATTCCGCTTTTATATCACTACTAAGCTGAGAAATCCACATTATCTTCCTGAAATATCAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841:ENSGALT00000012727:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(22.5=100)
A:
NA
C2:
PF127812=AAA_9=FE(27.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGCAAGAAGATGGCCTCT
R:
TTCAGGAAGATAATGTGGATTTCTCA
Band lengths:
334-1923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]