DreINT0058212 @ danRer10
Intron Retention
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21348934-21350119:+
Coord C1 exon
chr1:21348934-21349044
Coord A exon
chr1:21349045-21349993
Coord C2 exon
chr1:21349994-21350119
Length
949 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACA
5' ss Score
3.85
3' ss Seq
GTGGGTGTGTGTTTAAACAGAGA
3' ss Score
5.88
Exon sequences
Seq C1 exon
GTGGTGTTGACCATCTCTCAGCTCATGTGGTGCAGGGACATGGACAACTGCCTAGAAGGAGAACATGACCATTTTCAAGCGCTACAAGAATTTGAGATCACTAACTTTGAG
Seq A exon
GTGACATTCTTGAATCTTATTTTACACAGGTATGTTTTGGCATTAAAAATATATTGTAGGTGATAAAGTTATCCTTTTTTTTTTTGCTATCCAAAATCATTTATTTAAAGATCATATTCCATGAACATATTTTGTGAATTTCCTACTGCACATCAAAACTTAAAACTTAATTTCAGATTAGTAATATGCATTGCTAAGAATTTAATTTCTGCACATTTAAACGTGTTTTTCTCAGTATTTAGATTTTTAAAATCCTCAGATTCCAGATGTTTAGATAGTAGTATCTCAGTAGCATTCAAACATTGTCTTATCCTAAGACATTAAACATCAATAGAAAGCTTCTTCAACTTTTAGATAATGCTTAAATCTGAATTTGCAAACAAATGACACTTTTGATGTGTTTTATGTGCATTTGTTTATTCATTTATAGTTCCTTGGGAGTAATTGCTACTAAACAAAAATTACTGTACACTCACTGTCCACTTTATTTGGTGCACTTTATTGCTTTCAAATATTTGTTCAATCAAATCACATGGTGGCAATGTTGATTTGCACACATTTATAGCTGCCTGTACTTGAGAAATGTGAATAATTTGACTTTGAATGTAGCATAGTTGTGAGTATTTCAGGAAATACTGATCTATTGGATTTTTGAAGCACAAGAATCTCTAGATTTTAGAGTGAATGGTAGCAAAAATGCCTTTTTAATATCAGTGAAGAATTGCCCGACATAAGAAGCATGTGTAGTTGTAAAATCTGCAGGAACTGTATGATGTTGTTCAAAAGCTGTGAGGATTGTTTTTTGATGTTTTTATTTTCTGTTGAATGTGAACAAAAGATGGTCCAACTCAATACTAGCAAGGTATACCAATAAAGTGGCACATGACTCAAGTGTATTTATGTATGTGTATGTCTGTCTGTATTCATCTGTGGGTGTGTGTTTAAACAG
Seq C2 exon
AGACTGAATGCTCTTGCTGCTTTGGTCCGTGGGAATTTGCCTAGTCTTCATCGGAACATCATCACAGCTCTCATCACCATAGATGTGCATGCCAGAGATATCGTCACAGATCTCGTCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606:ENSDART00000141317:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTGACCATCTCTCAGCT
R:
TGCTCTTTGACGAGATCTGTGAC
Band lengths:
234-1183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]