HsaINT0049831 @ hg19
Intron Retention
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84848562-84851514:+
Coord C1 exon
chr2:84848562-84848675
Coord A exon
chr2:84848676-84851388
Coord C2 exon
chr2:84851389-84851514
Length
2713 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
ACAATTTTTTTTATTTGTAGAGA
3' ss Score
7.43
Exon sequences
Seq C1 exon
GTTATCCTGACTGTTTCTCAAATTATGTGGTGCCGTGATTTGACTGAATGTCTGGAAACAGAACACAGTAATCATATACAGGCCCTGAAGAATTTTGAAAAAGTAAATTTTGAG
Seq A exon
GTGAGATCTGTAACAAAGTGACATTGTTGTCCTGCAAGATGGTCTTGGTGGGTTTTTTTTTAAAGCACAGTTAATGCAAATTCACTTTATTTCAGAAATTCTAATGCTCTGACATTTGTAATAGCTCTTACAAAGCTTTACAATTCTAAAATTATTTGTTTTACATTTTTTAGAGACACTATCTTACTTTTTGTGTAGTATTTATGTGAATACTTGTGAAAATAGGAGGAAAAACAATTCCAGAACAAAACACCAGGGTTATAATTGTTTGCAACTTTTAAGGACAAACTGTATTCACTAGTTCCTGGATACCTCTCAGGGAAGTTTATTCAGTCCAGGAAAACCTCCAGATTCATGCCATTACTATTTCTAGGCTCTAATTCTATTTCTGCTGTTTTGTAAAACTGTCAGGCAATTAACAATAAAACAATAAATAATTCAATGAATTTAAATACCATCAGGAACTTTTAGCTATAGCTGGGAAATGCTATTTTGCTAAATAGCATTTAAATAGCACTAAAACTTTATACTTGTTGAACAGCAACTCCACATTTCCTCCTCTCCCTAGCTCCCTGTAATCACCACTCTTTTTCTATGAATTTAACTATTTTAGATACGTCATATAAATAGATCATGCAGGATTATCCTTCTATGACTGACTCATTTCATTTAGCTTAATATCCTCCAGGTTTATTCATGCTACCACATGTTATGGGATTTCCTTTTTTTAAGTCTGAATAATAAATATTTCATTGTATGTGTATACCACATTTTCTTTTATTTTTTTCTTTTTTAAGAGACAGGATCTCACTCTGTTGCCCAGGCTGGAGTGCAGGGATGCGATCATAGCACACAGCTAATTATTTTTATTATTATTATTTTTTGTAGAGACAGGGTCTCACTGTATTGCTCAGGCTGGTCTCAAAAGCTTCCCTCAAGCAATCCTCCTGCCTTGGCCTCCCAAAGTGCTGGATTACAGGCGTGATAATCATGCCCAACTCACATTCTCTTTATCCGTTCATCCATTGATGGACACTTGTGTTATTTCCACATTTTGGCTATTGTGAATAATGCTGCAATGAACATAGGAGTGCAGATAGTCTCCTCCGGATCCTGACTTCACTTCTTTTGGATGTGTACCAGAGTGGGATTACTGGGTCATATGGTAGTTCCATTTTTAATTTTTTGAGGAGCCGGCATATTGTTTTCCATAATGCCTGTACCATGTTTATATTCCCACTGGCAGAATACCAGGGTTCTCTTTTCTCCACGCCCTTGCCAACATGGGTTATCTTTTGTTTTTTTGATAACAGTCACCCTAACAGTTATGAGGTGACATCTCATTATGTTTTTGATTTGCATTTCCCTTATGATTAGTGATGTTGATCATTTTTTCATATATCCGGTTAGCCCTTTATATGTCTTTTTCTGATAAATGTCTATTCTCTTCCCTTACTCAAGTTTTAATTGGGTTATTTGGTTTTTGCTCATAAGTTGTAGGAGCAATTAGACCCTTGTCTTACACCATACACAAAAATCAACTCAAAATGGATTAAGGATTTAAATGTAAGACCTGAAACTGTAAAATCCCTAGAAGAAGGCATAGGGGAAAAGCTTTGACAATGGCGTTGGCATTGATTTCTTGGATATAACACCAAAAGCACAAGCAACAAAAGGAAAAATAGATCAATGGGATTGCATCAAACTTAAAAGCTTTTGCACAGCAAGGAAACAATCAACAGAGTGAAAAGGCAATCTGGGGAATAAAGGAAAATATTTACAAACGGTATATCTTGTAAGGACCTAGGCCGACTCTTTTGACTCCAAATTCAATTCTACTTCCAAGCAATACTACATTTTTAAAGAGTCACCCTTAAAACAGAAAAATAAAACAACCTTATTGAATAAAACAACTTTATTGAAATACAACAACTTTATATATATTTATATGTAAATTTTCAATATTTATTTATCAAATAAAACAACTTTATTGAAGTAAGAGAAAACACTCTCATGAAATTCCTCAAAGAAACTTCATCTCCATAGCTTCAGAAAAGAGGAATGACTCCCTAAAAAAAGTTCCTTTGCCTCTGTGTAGAGGTGGTCCCTCATCAGGGTTGGCCCAAGTGACATTTCAGCACAATGGTGCAAGGTCCTCAGAGGCGCTGCTCTTCCTTGAAAAAGATTTAATTATTAAGGTAAAACTCAAGTAAAAATTTAGCTAACTCTTTCTGAAAATGTTTTCATTTAACCAGTCATTGGCTAGCTTAAAATGCTCAGATTTTCTGAATATTAATGGGAAAACCACCCCTAAAACTGAAGAGTATCACCTTTAACCACATTTAATTTTTAGGGAGGACACTCTCCTCTAGAGAATCATCACATAGTGGTTAAGAACGTGGGCTTTCCTCGAGGCAAATGTCTACTCAGGTCTCATTTTTGCTGCTTCATAACTCTGTGACTGCCATCAAGTTACTTATGCTCTCTGACCTTCAGTTTCCTCAAATGTACAATAGGGGTAAAGACAGTATATATTTCACAGAAGTCTTATGAGAATTAAATAAAAGTATTGTCCTGTTTGGTCACAAAATTATAGATTCTTAAAATTAGCTGGTTTTTAGCAATGTCTCTCCAAATTGAATGGTGAAAGAGATAATGTATATATGTAAGCTGATATTGGAAAATTCACCATGACAATTTTTTTTATTTGTAG
Seq C2 exon
AGATTAAATGCCCTAGCTGCAATAGTTCAAGGCAGTCTTCCTAAATTACACAGAAACATCCTAACTGCATTGATTACTATTGATGTGCATGCAAGAGATATAGTCACTGAACTTGTTCAATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-DNAH6:NM_001370:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)