GgaINT0129590 @ galGal3
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
NA
Coordinates
chr18:9750782-9751139:+
Coord C1 exon
chr18:9750782-9750889
Coord A exon
chr18:9750890-9751007
Coord C2 exon
chr18:9751008-9751139
Length
118 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TCACTTCTTTCCTTCCTCAGATC
3' ss Score
12.05
Exon sequences
Seq C1 exon
GTTGCTCTGACCTGCACCCAGATCTGGTGGACCACAGAAGTCGGCATGGCCTTCGCAAGGCTGGAGGAGGGCTATGAAAATGCAATTAAGGACTACAACAAAAAGCAG
Seq A exon
GTTTGTCTCCCGCTGACCCCGTCCTGCAGTCCCTGCTGCTGTCAGCGGGGTGGGGGGGTGCAGACAGGCAGGAAAGTGTGATGTAATTTTTCTCTTTCTCACTTCTTTCCTTCCTCAG
Seq C2 exon
ATCACTCAGCTGAACGCGCTGATCTCGCTGCTCATTGGGAACTTGTCTGCGGGAGACAGAATGAAGATCATGACGATCTGCACCATCGATGTGCACGCCAGAGACGTCGTGGCCAAAATGATCCTCACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGACCTGCACCCAGATCT
R:
TCGTGAGGATCATTTTGGCCA
Band lengths:
234-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]