MmuINT0050753 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117950270-117952116:-
Coord C1 exon
chr11:117952030-117952116
Coord A exon
chr11:117950396-117952029
Coord C2 exon
chr11:117950270-117950395
Length
1634 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
3' ss Seq
CTCTCACTCTCTCTCTGCAGATC
3' ss Score
14.19
Exon sequences
Seq C1 exon
ATCTGGTGGACGACGGAGGTGGGCCTGGCGTTCGCAAGGCTGGAGGAAGGCTACGAAAACGCCATCAAAGACTACAACAAAAAGCAG
Seq A exon
GTTTGGAGGCTCTGGGCCCCACACTACCAGGCAGTAGCCAGAAGCCCCACCCCCATCCCACCCCCAACCCCCTGTCTTGATGAGAGTGCCTATTGCTGAGATAAAAACTACATGACCTAAAGCAACTTGGAGAGGAAAGGGTTTATTACAGGCGCAGCTCACAACTGTAGTCCGTCGTCCAGGAAGTCAGGACAGGAACCTGGAGGCAGGAACTGAAGCAGAGGCCACAGAGGATCGGAGGATCATTGCTTACTGGCTCGATCCTCAAGGCTTGCTCAGCCTGTTTTCTTTTGCAGCCCAGCATCCTCAGCCCAGGCTAGGCCCCACCCACAGCAGCCCGAGCCTTCTCCCATCAATCGCTAATTAAGGGAATGAACCACAGGCTTGCCCACAGGCTGATCTGGTGGGGGCATTTTCTCAGTTGAGGCTCTCTCTCTGAAACGACTGTAACTTGTGTCAAACTGACCTAGAAGCAGGCAGTTCAGGTCCCCCTCTCCAAGGTGAAGCTGTATTCACTGTCTGTGTGGGTCATAAGCTGTCCCGTAACAGTACAAGTGTCATCGTCACCAATACATTACTCCTTCTACAGTAAACAACTTGCTGGGGTCAAGCCTCAGAACCCTTCTACAGTGTGTCCCCAGAAATCAGACGCCAATCTACAGTGTGTCCCCAGAAATCAGACGCCAATCTACAGTGTGTCCCCAGAAATCAGACGCCAATCTACAGTGTGTCCCCAGAAATCAGACGCCAATCTACAGTGTGTCCCCAGAAATCAGACGCTAATCTACAATGTGTCCCCAGAAATCAGACACCAATCTACAGTGTGTCCCCAGAAATCAGACGCCAAAACTATTCTTTTTTTTTACAATCCCCACCCCCTCTGTCTCTTTGTGTGTGTATACATGTGCATCTCGTGTGCATGAGATCAGAAGACAACCTGTGTGTGTGTGTGGGGGGGGGGATCAATTCTTTGCTTCCCGTGAATGGAACTGGGGTTGTTGGGCTGGACGGCAGGCACCTCCATCCTCTGAGTACTTTCTTTCCCTTGAGTCTCTTGGTTAAATCTTAGAAGATGCGTGTGTGAGTTTGTGAGTGTGTGTCCGTGCACATGAACCTTGGGTGGTTTCTCAGGAAACTTAGTTTGAGGTCAGGGTCTGAAGCTTTCCCATTAGGCCAGGTTAGCCCCCGGGAGCCCTAGAGATCCTCCTGTGTCTGCCCCCCGAGGGGTGTTGGGATTACAAGCAAGATGCCTCCTTACTTACACGGGATCGAAGCCAGGTCCTTGTGCTTACAAAGACAGCACTCCACTGGCTATGCCATCGCTCGGGGCCGATTGTCTCCTGTAGCTTCAGAGCCTTCCTGCACATGTGGCCTGATTACAGGCAGCTGTTTTTACTGAAGGACAGGCTTGCTCTTCTAAGGGCTCCATAGTGTACCCACCTGGGAGGAGAGGAACTTTTCTGGAGGCTTTTTTTTTCCATCGTGGTAAACAAGGGCTGTGATCTTGCGTGCACACACACAGGCGCACGCACAAGCGTCATTCCCTGTGGGCCATGACAGCCTGGGCGTCCGGCCCAGTGAGCTCTGCCCCAGCACAGGCACACTTCTCTCTCTCTCTCACTCTCTCTCTGCAG
Seq C2 exon
ATCAGCCAGCTGAATGCGCTCATCACTCTGCTCATTGGAAATCTCACCGCCGGTGACAGGATGAAGATCATGACCATCTGCACCATCGATGTGCACGCCCGAGACGTGGTGGCCAAGATGATCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGTGGACGACGGAGG
R:
GGTGATCATCTTGGCCACCAC
Band lengths:
213-1847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: