DreINT0058239 @ danRer10
Intron Retention
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21411385-21412788:+
Coord C1 exon
chr1:21411385-21411552
Coord A exon
chr1:21411553-21412552
Coord C2 exon
chr1:21412553-21412788
Length
1000 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GTTGACCTCTTGATGTGTAGGTG
3' ss Score
5.4
Exon sequences
Seq C1 exon
GCACGAGACCGCATCAAAAATGGTCTAACTAAATTGCTGGAGACAAATGAGCTGGTTGATAAGATGAAGCAAGACCTCTCGGCTCTGGAGCCAGTGCTTGCGCAGAAATCAATCGATGTCAGTGCTCTTATGGAGAAACTTGCCGTGGACCAAGAAAACGCGGATCAG
Seq A exon
GTGTGTACTATTAAAAATACAACCGCTCCCTTTTTTTTTTTACAGGAACTTCCAAACTTAGAGTTGTCTTTTTCATGCATGGCTTGTTTGGAGGGATTGTCTGGTGCATTTAATTCCTTAGTTTGGTCTATTTAGTTTTGAACATGGAACTCGCACTCTGAAATGCAATTCAAGATTTCACACTTAGATAATGCTTGATGATATTAGCAGGTTTAACATGCTGTGCTGGAAGAGAACCTTGAGCTCAGGTCTCCCGTCTGGTCGAAAAGCATGTAAGGGGGTACAAGATCAGGTAGTTCTTGAGGTTTCCCCTGGGTAAAGGAGGAAAGGGGCGAGATGGGGTGAATGGGTGTATTCTTCGGAAAACAAAGATAAGGGAGTTATTTTAGACAGGCTATTTATAGTGGGTTTGGATTAATCCGATTGGCTTACTTATGATTATGGATGCAAGACCAGCTGTGATTAATCATATCCCGTGCTCCTCTTGAAATTAGTTTGTGAAACTTCACAAAAAAAAGGGATCTGACTAAAAATTGACCTATTAAAATTAAATTTGTAGTGGCTTATGGTTCATATGAGGTGAGAAAGCAATGAAACCCAACAGACCAGTGAACCAAGTGTAATCATAATTCATAACGGGAATTGCACAACATAAAAAGCAGCAGAGTCTGATTCTGTGAGTGAACATTAGTTATCATAGTTGAAGTCTCTTCTTCATAATATGTTGTATAATTGCTTTTCTCTTTGCACTTCAAGAACATTGTCCTCACAAGTCCGTACTTCCCACTTAGTTATGAATACTGTATACCTAAATAAATATAATAAATAATATTCATATATGTATATGACACAACAAGCAAATAAAGCCACACAAACAGAGGCACTCTGAACAATAAGAGGACAGTGATATAAGTGCCAAAACAAAATTTCAGTTTTGTTCTTGATTATACAAAATCTCCTGCCCATTAGCATTTGCTCTTGTTGACCTCTTGATGTGTAG
Seq C2 exon
GTGCGTAGGGTTGTGAAAGAGGATGAAGCTTTGGCTAAGGTAAAGGCAGAAGAGACTCAAGCCATTGCAGATGATGCACAGCGTGACTTGGATGAGGCTCTGCCTGCACTCGACAGCGCCAATAAGGCCCTCAATGCCCTTGACAAAGCTGACATTTCAGAAATGCGCGTCTTTACCAAACCACCAGACCTCGTGATGACTGTGATGGAAGCTGTGTGCATCCTGCTCAGCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606:ENSDART00000141317:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF127772=MT=PU(15.8=94.6)
A:
NA
C2:
PF127772=MT=FE(23.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGACAAATGAGCTGGT
R:
TGCACACAGCTTCCATCACAG
Band lengths:
353-1353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]