RnoINT0049047 @ rn6
Intron Retention
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101013931-101015528:-
Coord C1 exon
chr4:101015361-101015528
Coord A exon
chr4:101014167-101015360
Coord C2 exon
chr4:101013931-101014166
Length
1194 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
AACCTTGATTCTGTGGCTAGGTC
3' ss Score
6.72
Exon sequences
Seq C1 exon
GCACGAGATCGTGTAACGAATGGTCTCACCAAGCTATTAGAAACAAATATATTAGTAGATAAAATGAAATTAGACCTTTCGGCTTTAGAACCTGTGCTATTCCAGAAATCACAAGACGTCGAAGCCCTGATGGAAAAACTAGTGGTGGACCAAGAAAGTGCTGATCAG
Seq A exon
GTATCTAGTGGGATGGGATGGTCATATGGGCAAGAAGGCTTCAGTTGGAACCTCAAGGATTGCACAGAGTAAGTTTATCGATTTTCTCATTGCTATGACCAAATACCTGACAGGAAGCAACTTAAGGGAGGAAGGGTTTGTTTGCACTAACAGGCTGAAGGGGTACAGTTCACCATGGCTTCAGGAATGTGAGGCAGTTAGTCACAGTGTATTCACAATCAAGAAGCAGAGATAGATGAACACCAACGTTCTGTGGGCTTTCTCCATTTTCTTCAGTCTTAAGACCCCCACAGCCCATAGGATGGTGCAACCCACATTCAGGGTCGGTCTTTCCCTGCTCAGTTAAACCTCTTTGGAAACAACTTTATAAACACACCCAAGAGTTGTGATTCCGTGTCAATTGTAAATTCTGTCAAGTTGACAATCGAGATTAATCCACAGTAAGTGATCAGATCATTTTGTTATGTGTGTCATTAAAATAGATACCAGAATCAGTAATGCTATTTTCCTAGAAATTCAGTAATGTTTGAAGTTGTAAACAATATCACTTAACCAAATTGGGATGGTTCTCCATCACAGAATTGGTACCACTCAGTGACCAGAACTGAGGGTCATGAGAAAAGCAATATCTGAAATTATAAAATTGTTCCTCCACCTAAGAAGAAACTGTTGAGTTTATCACAAGACATAAGATAGACAAAAAACAACAGGAATGGAATTCCTGCTCACCATTGATCTAACACAAAGGACAAATACACTTCATTATCCTGACTTTTCAAACGCAAGTCAGATGTCTTGAATTTTTGGAGTGTTTTGAATTTTTGTAGATTTTTGAATGTTTGCACACATAGGAGATATACAATACCAGACTAAGCACAAGTCCATTCATAACCTTTATAAACATCTTATAGTAACTTGGTACAATTGGTTTTAGCTGCCTGCATTTGACTGTGGTGGTCACATGAGGTCACATGTGAAATTCTCTGTTTATGGAAGTGTTTGGGGCTCTAAATATTTCAGATTCAGATTTTCCTAACTAAGGATGCTCAGGTCTTCAACCACACCATGCTGAATGTGCTCAATCTTATCTGATCTCAGAAGCAAGGCAGGGTTGGGCCTGGTTAGTACTTAGATGGTAGACAAGGAGGCTCAGCCTTAATGAGACCTCTTAAGCAACCTTGATTCTGTGGCTAG
Seq C2 exon
GTCCGTAATGTTGTGCAAGAAGATGAAGCAATAGCAAAGGTGAAAGCTGAAGAGACTCAAGCGATTGCTGATGATGCCCAGAGAGACCTGGAAGAGGCACTCCCTGCCCTTGAGGCTGCCAATAAAGCACTGGATTCCTTAGACAAAGCAGATATCTCTGAAATCCGAGTCTTCACAAAGCCCCCTGACTTGGTCATGACTGTGATGGAAGCCATCTCCATCCTCTTAAATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581:ENSRNOT00000020894:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF127772=MT=PU(15.8=94.6)
A:
NA
C2:
PF127772=MT=FE(23.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTAACGAATGGTCTCACC
R:
CAGGGGGCTTTGTGAAGACTC
Band lengths:
346-1540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]