DreINT0058318 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10410501-10412954:-
Coord C1 exon
chr6:10412806-10412954
Coord A exon
chr6:10410652-10412805
Coord C2 exon
chr6:10410501-10410651
Length
2154 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
TTCTTCATTTTAATTGACAGGTA
3' ss Score
8.83
Exon sequences
Seq C1 exon
GTGCTTACCTTGGCCAGTAACGAGCGGATATCACTGGCCCCTTCCATGCGCTTGCTGTTTGAGATAAGCCATTTGAAAGCTGCAACACCGGCCACTGTATCAAGGGCTGGAATTCTCTATGTGAACCCTCAGGATCTGGGCTGGAGTTC
Seq A exon
GTAAGTGACAGATTTCATTTCACTGACATATTTCTCAAACTCATTTCCTTCCTGTTAGTGTACACTTCAATTCAAACGTTTAGTGTCTGTAAGATTTCTGAATTTAAACTTCTCAAAATACAGTAAGGGAGGATATTCTTGAGGTGTTGGGGGATAAATAATCATGCTATTGATGTATGATTTATTAGGTTAAGACGTTATTATACTGAGAAATGTACTTTAAGTTTAATTGTTAGCAATGCAAATGACTTTTTATTATATATTTACAGCATGACACTTAAAAAAATGTCTTAAAGGAACATAATCTTGACTTAATTTCTAAATCAGTAGTTCTCAAACTGTGGTACATGTACTACAAGTGGTACGCAGGCTTCTAGTGGTACTCAGAGGAATCGCTGAATAATTCAAGCAAAAGAAATTAACACACTTTTGATTTTAGTAGGCTAAACTTTTTATTTTATTTTTATTTTTCTAATGTTTGTTATGTATTCTATCATTTGAGGTTGTTTCCTCCCCATACTTGAAACAGTTGTTGGGGGCATATCTCGTAAATTTTTATCACAGTGTAGACAGGTATAGTTTAATCACTTGCTTCTCTGACACACATAGCCTACTCTAACGAGCAGTAAGCAGATCTAGTTTCTAATTTAAACATGTAAATACAATTCATATATTTAAAATACAAGTTAATGTTTAGATTTTAAAGATATACAAGTAAGTCATATATACATAAAACATATATATTTCAAAATTGATGAAATATGTATATAACCAATATTTATGAGGTCCAAGAAACATTTGCAGGTTTTGATGAATAGGCTACTTTATGATAATACTTTACATTCAAGTACAGCAGGTTTCTTTAAACGTTTTAAGAACAGTGGCATTTTTAATAAACTTTTAAAATCACATTTTAATTTAAACGTTGACGTTTTATTTATCTTTATTTTTACCTTTAAGTGTGTTATTGTTCAAACTATTTATTATGTTTAAAGTGGCTGACTTACACCGGGAGCAGAGCAGAAAAGAATAAAGAGAGAGGATAACATCTTTATTCCGGGATATATTAGTAAATACACTTGCATATAAAGTAAATCGTACCTCAAAGCATTTACTGGGGCCCTGGCGATTTTAACTGGGGCACGTGCCCTGAATTCACCTAGATGGGATGGCCGATATGGACCAAAATCCTTAAGGAATATTTCCAGTAACTTGAATTTATGCCATGAAGGATTAAGACAGTACTGAAGGCGAATGGGGGTCCAACCTGGTTCTAGTAAAATGTACCTAATAAAGGAATATTTATATATAGCTGGGCTTATACCTGGGCTTGCCCGCGTGGGCCCACCTGGGATGGCCCGTGTGGGGCCAACATAGGCTGGCCCGCCCGGGGAGCACCTGGGCTGGCCCGCATGGGTAAAAGAGATTTTTAATGATTTCATCGCTGGAGGAAAACATTCCTAAAAGATTTTATCTGCCATGTTTGTGAACTGTGCAGAGCTGTAGTCGCTTATTTAGGCCTACCAATTATTTCAATAACCACGGTTCTAAATTATTTCTTAGCCTAAAAGGAAAAACAATACTTTTCACCAATGTAGTGGATTTTTGGCTATTGCCAGATATTTATCTGATTTTATGATTTTATAAAATCAGATAAAGATTTAAAAAAAAAATCAATTATAAGATACTTTTAAATGTAATTTATACCTGTGCTATTTCAGCTGATTTTCTTTGGCTGATTTGCTGCTTAAGAAACGTATTTTCAAAATATTCAAATATTGTTGTAATAATATATAAATATTACTGTATATTTGCTGCTAAAATTTTGTAAAAATTGTAATACATTTATTCAGAACTTTAAAAATAGAACATTTAAAAAAAACATAATTATAAAATATTTTGTTCAAAGAGTTCTAATATATATATATATATATATATATATATATCATAATTTTTACAAAATTATTGCAGCACATACTGTAATTGTAGTGTTATATATAGCATAAATGTCTTTACTTTCAGTTCTGCTCAATTTAGCCCATTCATGATGAAAAATATTGCTTTCTTTTCAAAAAATGCTTACTGACCCCATACTTTGTGTGCTAGGGTAGGTTTTTGTTTTTTAGACACTCAATTCTTCATTTTAATTGACAG
Seq C2 exon
GTATGTGACAAGCTGGATAGACACACGTCAGGCCCAGTCCGAGCGAGCAAATCTCACTATATTGTTCGACAAGTATGTTCCCTACTGTCTGGAGCAGGTCAGATGCAACCTTAAGACGATCACACCTATACCTGAGACAAGCATGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(25.5=70.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]