GgaINT1011508 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10084204-10084705:+
Coord C1 exon
chr18:10084204-10084352
Coord A exon
chr18:10084353-10084422
Coord C2 exon
chr18:10084423-10084705
Length
70 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGC
5' ss Score
3.59
3' ss Seq
GCTCACCCATCCCTCCGCAGTGT
3' ss Score
8.88
Exon sequences
Seq C1 exon
GTCCTCACCTTGGCCAGCAATGAGCGCATCCCCCTCAACCCCACCATGCGGCTGCTCTTTGAGATCAGCCACCTGCGCACCGCCACGCCAGCCACCGTGTCCCGGGCAGGGATCCTCTACATCAACCCCGCAGACCTGGGCTGGAACCC
Seq A exon
GTGAGCACAGGGATGGGGATGGGATGGGGGGCGCTGATCCCTGCAGCCCTGCTCACCCATCCCTCCGCAG
Seq C2 exon
TGTGGTGACCAGTTGGATCGAGAAGAGGGCCGTGCAGTCTGAGAAGGCCAATCTGACGATCCTGTTCGACAAGTACGTGCCCGTGTGCCTGGAGAAGCTCAAGTTTGGCTTCAAGAAGATCACCCCCATCCCTGAGATCACGGTGATACAGATGATCCTGTACCTGCTGGAGTGCCTTCTGACACCACAGAACGTGCCACCGGACTCTCCCCGTGAGCTCTATGAGCTCTTCTTTGTCTTTGCGTGCATCTGGGCCTTTGGCGGGGCCATGTTCCAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(25.5=70.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCTACATCAACCCCGCA
R:
CAGGGATGGGGGTGATCTTCT
Band lengths:
172-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]