RnoINT0048809 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107087737-107087969:-
Coord C1 exon
chr10:107087821-107087969
Coord A exon
chr10:107087753-107087820
Coord C2 exon
chr10:107087737-107087752
Length
68 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
GTCAGCAGACTGTCTGTCATGGT
3' ss Score
-8.59
Exon sequences
Seq C1 exon
GTCCTCACCCTGGCCAGCAATGAGCGGATTCCCTTGAATCGCACCATGAGGCTGGTGTTTGAGATCAGTCACCTAAGGACAGCCACCCCGGCCACCGTCTCTAGGGCCGGCATACTCTACATTAACCCTGCCGATCTGGGATGGAACCC
Seq A exon
GTGAGTAAGGCTTGGGCGCTCTCATCCCAAACCATGGCAGAGAAAGTGGTCAGCAGACTGTCTGTCAT
Seq C2 exon
GGTGGTATATGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(25.5=70.0)
A:
PF077289=AAA_5=PD(25.5=70.0)
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]