RnoINT0048811 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107083679-107084057:-
Coord C1 exon
chr10:107084014-107084057
Coord A exon
chr10:107083902-107084013
Coord C2 exon
chr10:107083679-107083901
Length
112 bp
Sequences
Splice sites
5' ss Seq
TACATAATT
5' ss Score
-4.81
3' ss Seq
GGACGGGTGGCTCTCAAGAGGTG
3' ss Score
-8.45
Exon sequences
Seq C1 exon
ATGGAGGGTGGGAGGATCCAAAGTTCAAGGTCATCCTTGACTAC
Seq A exon
ATAATTTGAATTTTGGATTCAGGAGATACTGGAGGAAGGTGAAGAAAGAGAAGGAAGAGGGGGCTGGAAGAAGGGAGAGAGGAAAGGCGAAAGGACGGGTGGCTCTCAAGAG
Seq C2 exon
GTGGCTCACAAGAGGCGTGCCCACGTGCCTGGACAAGCTGCGCTTCGGTTTCAAGAGGATCACCCCTGTGCCGGAAATCACCGTCATCCAGACCATCCTGTACCTGCTGGAGTGTCTGCTCACAGAGAAGAATGCCCCGCCCGACTCCCCCAAGGAGCTGTACGAGCTGTACTTCGTGTTCGCCTGCTTCTGGGCTTTCGGAGGCGCCATGTTCCAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGTGGGAGGATCCAAAGT
R:
CTCCGAAAGCCCAGAAGCAG
Band lengths:
244-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]