DreINT0058320 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10408746-10409147:-
Coord C1 exon
chr6:10409016-10409147
Coord A exon
chr6:10408920-10409015
Coord C2 exon
chr6:10408746-10408919
Length
96 bp
Sequences
Splice sites
5' ss Seq
CATGTCAGT
5' ss Score
2.02
3' ss Seq
TATTCATTTTCTTTGACCAGCTA
3' ss Score
5.65
Exon sequences
Seq C1 exon
ACTCTGTGTTGTCTGCTGGACTGCTTGCTGACTGATGAAAACACACCTCCAGACTCTCCTCGTGAACTCTATGAGCTCTACTTTGTGTTTGCAAGTGTTTGGGCCTTTGGAGGAGCTCTTTTTCAGGACCAT
Seq A exon
GTCAGTCTGCAAGTTTTTCAACTATCTTTGCTGTAAGCGTTGTGATCTTCACTTTGAAATTCTCTCTCTTATTATTTATTCATTTTCTTTGACCAG
Seq C2 exon
CTAATAGACTATCGTTCAGAGTTCAGTCGTTGGTGGTGTAAGGAGATGAGAGCGGTGAAGTTTCCTTCTCAAGGTTCAGTGTTTGATTACTACATCGACCCAAACACCAAGCGCTTCACGCCATGGAGCGAACGCACACCTCCCTTTGAGCTGGAGCCTGACATCCCTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(3.3=15.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTGCTTGCTGACTGATG
R:
ACTTCACCGCTCTCATCTCCT
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]