HsaINT0049329 @ hg19
Intron Retention
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21760343-21765602:+
Coord C1 exon
chr7:21760343-21760474
Coord A exon
chr7:21760475-21765428
Coord C2 exon
chr7:21765429-21765602
Length
4954 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
ATTTCTTTTGTTCTCCTTAGATT
3' ss Score
11.6
Exon sequences
Seq C1 exon
ACTCTATGTGTTCTTTTGGAGTGCTTGCTGACTCCTGAAAATGTACCTTCTGACAGCCCAAAAGAAGTTTATGAAGTCTATTTTGTATTTGCTTGTATCTGGGCTTTTGGAGGCACCCTGCTACAAGATCAG
Seq A exon
GTATGTTTAGAAATAGTTTACAGGACCAGTTTCCAGTTTTGTGTGGGACAGGGTCATGGGGAGGTTAAAACATGTGATCTGTACCTTTTTGTTATGTTATAGATCTATACTGCTTGCCCTGTTCTCTCCTAAGTCTATGCATTCTCTGGGTAGTCCCATCCCTGATGGTTCTAACCCCAGCTGACAATGCCAAATCCATACCCTCCAGCCTGGCTGTGTCTTCTGAACTGAAAGTTCTGTGTTTCTGGCTGCTCTGGGGCCTCGCCTTCAGCATGCTGTTCTACAAGAAGCCCCACTCAGTGTGCCTGAGACAGATCTCCTCCTCTGCCCCATACTCCAACTTGCCCCTGCTCTTCCTTCTTTTCTTTTGCTCAGTGGTACATTCTTCCCGGTAGCTCCAGTTAAAAACGTGGAAGACATCACTCTTCCTGATTTCTGTGTCCTGTGATCTCAGACCCTTTCAGTTTCACCTGTGAAATAGCTGCCAACCCTATTCCCTCTTCTCCATCCCTGCAGCCTAAATTCAGGAGCAAAGCATCTTTAGATTGCTCTGGTTATCATAGCGTCTTAGTAGCTCAGATCGCCATAACAAAATACCACAAATTGGGTGACTTAAGCAATAGAAATTTATTTCTCACAGTTCTGGGGACCAAAAGTCCAAGATTATGGTGTCAGCATGGTTGAGTTCCAGCAAGGACTCTCTTCCCACCTTTCAGACCGCCACTTTCCCGCTGTGTCCCCATGTGACAGAGAGAGAAAGACATACTGGTTTCTCTTTTAATGAGGACACTAATCCCATCATGAGGACCCTGTATTCATGACATCATCTAAATCTAATTATGTCCCAAGGCCCCACCACCAAATATCATCACACTGTGGGGTAGGGCTTCAAAATATGGATTTGGGGGTGGGATGTGGGAGGGGGGATCACAATTCGGTTTGTAGCATTTGATAATCTTCAAATTGGTCTCCCTCTCTCCAGTCCCTCTTACTTCTAACCAGTCTCACACACTATTCCCAGGATAGTCATTTGTGAACCATAGTCAACCCTGGGTCAATTCCTTTTTCACTGATCTTTTTTTTAGCTGAAAGTGAAATATTCATGCCTGTACAGATTGCTTGCATAGCCCTTTTGTGTCTTCTGATTTCCTGTGGGAAAACACTTGAGACAAACATTTGCACCAGCACACAGATCCCACGAACTGCTTAGACTTACCAAAGTGCAAAGTGGGAATTATTCAACTTTAGAAATTTGCAGATCTAATTGCCACCATGCACCTCTATGTGTAATTTTTCTCATGTGATCTTTACAATGGTTCTTCAAGGTATCCTCATTGCACAAATAAAGTAAAGCTCAGAGGGGCAAAGTAACTTGCCCAAAGTCACGCTGATGGGAAATGGCAACATCAGGATTCCCACCCAAGTGTGTCTTTCTCCAAAAGCCACACCTTCCATGGTACCTCAGGGCCTCTCATGGTTCATAGTGCTTCTATGGGTACCCCTGAATTTTTACATTAAAAATAGATAGCACACATTTTCCAGGCTTCCTTGCTCTTTCCAGGTGTAAATGGGGCATTTACATTGAAAGGCATCGCAGCCAAGAGTGACCTATATTTCTGTTGGTTTGTTCACTGTAGATCAGAAAATAAATGGTTGATATAATCTGTTGGCCAGTTCCACTTCTCGCCACTAGGTTACCATAACTCATGCCTATTATTATAATAATATAGTTGGAATTCACTTGGCCTCCTAGATCTTATTTCAGCCATTCTCAGAAGCCAGATTCCTTCTGTAATTTCCAAGTGCTTTCTAAAGATTAGCAGCCAATACTGTGTGAGAGTCAAGTGTTCGTGTCAGGGACTTCATGTGGCTTTCTCAGAGGCACGGTTTACAACATGTGTGGGTTTCTTGTTAATGGAGGCCACATGCAGACAGAAGGCAACCCTCCTTCTCCACCAGGTATTTCTTTCAATATTTACCCTTTTCTCCCTTTCTGGGACTGTAAAATCAGGTGGGATGTTGATAGCGGACATCTTCCCCCTCCTGCTCATAACCCCTCACCTCCCTCCCAGCTGACCCTCTTTTAATCTTTCCAGTTTCCAAATGTATCAGCCTTACCCCCTAGTTATATAAGCTAGAAGCTGGATATCACTGGCACCTTCCCTTCGCTAATTAATAGTCAACATGAGCAGCAATAGCAGCTTAACATTTTCAAAAGGGCTCTAACTACAGAGCATTTAAAACAGAGGCTATGAGGTTGGCAATATGCATGAAACAGACACAATAAATGTTCTCAGGATAGCCACTTGGTAGCTTAACAAATTGAGTGTCTAATATGTGTCAGGGAATGTGCTTAGAGCTTTTCATAGGGCACCTCATTTACTCTTCAAAAACTATAAAACTCTATATGGATTGGTACAACTCTTCTTTTACAAATAAGGAACTGAAGCTTAGAAAGGTATTTTAATCTGCTTCCAGGCACAAAGCTAACCCATGTCTAAGCCAGGTTCAAACAGCAGCGGACTGACTCAGGACCTATGTTCTTCAGCCATTGCAGCCAACCTCCAAAACAAGTTTCAAATCAACTTTATCTGAACTCCCATAAACTGCCGTCATTTCTCACTTGGCTTCTGAAGTAGCCTCCTCACTGGGCTTTCTATTTCTGCATTTATTCTGATAATTCATCATCCACTCAGCAGTCAGGGTGATTTTTTGAAATGCACGTGAAATCCTATGATATACTCCAGAGTTGAAAACACTTGAATGGCTCCTTGTTGCCTTTAAGATTACATTTCAAATTTTAATTCTATTTACAAGGCCTCTGAATCTAGCCCTGCTTAGCTCTCCCTATTTCTTCCTCTGCCACTTCCCCCACTCCCCCACTCCCCCACCCCTCCACCCCCAGCTACAGGGTCCAGTTTCTTGAGCACACCAAGTTCTTTCATACCACAGGAACTTTGTACATGCTGGACTCTTCCTTAAACGGCACTTAAAGATGCCTTCCCTGAACATCCAATTAAAATAGGTTGCCTCTGTTATTCTCACTTACAGCAAACTTTACTTTCAAGGCAACTGTTGATGTCTGCGTTTGTTGGCTTAGCCTCAGCTGGACGACACATCTTCATGTTCCTCTCCTCTATGTTCCCCATAAACTCTGTGAGAGGAGAGACTCTGTTGGTTTTCTTTTCTACTTTAGAACAGATGCGTTTTAGTTGAATTAATTAATGAATGAAAGATTTGTCACCAAAATCATTTTGCCTATATGTAGTGGTTAGGTGAAGCAAAGTTTGATATCAAGTAAAAGTTAAATGTAGTCTGCCTGCAGAGAATGGTGTCACATAAGTAATATCATCTGAACTGTCCTGGCTCAAGACCAACTTTTGTAGGGTGAAGAAGTATCTTCTACCACCAATCTGAAAATAATTTAAATGAACCTAAAGTCATAACTCATGCATGGGGTGGTAGAAGGATGCTCTCAGCTGGTTTGGAAGATGGTGGGGCAAGCTCTCCCTGCAAACACCGATCACCTCCTTCTGCCCAGTTTATAGGCCATAATCCAATGACATAGGGACGTCAAAGTAAAAGCAAGTTTAAAAACTTCTATGGGGAAAAATCACGGTTGAAGTCATAGATAGAAATGAGATTGCTGAAAGCAGTAGACACACACAGTATTTTTAAGAGTTCATCAAACTCACTATTTTAGGTCATGCTATGGATATAGGAGTCACTGCGCCAGGTCTCCTGTGGATATAAGAGGTACAGAGCCAGGTCATCGTATGAATATAGGAGTCGCTGAGCCAGGTCATCCTATGAATATAGGAAACACTGGGCCAGGTCATCTGTGGATATGGGAGTAACTGGGCCAGGTCATCCTATGAATATAAGAGTCACTGGGCCAGGTCATCCTATGAATATAGGAGTCACTGGGCCAGGTCATCCTGTGGATGCATAGAGGTATCACTGGACCAGGTCATCATGTGGATATGGCAGTGACTGGACCAGATCATCCTAGGGATATAGGAGTCTCTGGGCCAGATTATCCTATGGATATAGGAGTCACTGGGCCAGATCATCCTGTGGACATGGGCATCACTGGGACAGGTCATCCTGTAGACATGGGCATCACTGGGCCAGGTCATCCTGTGGATATAGAAGGGTTTTTCTAGTTGTTGCTCACAGTTGTCCTTTTCTTTATTTTCCAACCCTAATCTAGCAGTAAATGGCTTATATCTATACTGATATTAAAGCAAGCACCTCCCAGTAAAGAGAGCCTGTTCCTTGCCAATATAAATCTCTCTGGAGGCTGAAAGTTGATCCCTATGCAGTTTTCAGCTGGACCCCTTAGATTTGGTCTGGTGGGAAACCAAGCCCATGCGTTTATCCATTCCTCCATCTCTCATGGCAGGGATTCCCAGATTTAGAATTCCAGAGATCAACAGAGTTTCAGTAATGATGTGTAGGAATGGTATAGAGTTGCCAGTTGTTTACTTTTCTAAGCAAGAGCATTTATGAAAATAACTATCACCATAATTTTATAAGGGAAAAATATTTTATCATTGAAAGGGCCAGAGAAGCTATAAGCTCAGAACAAAGGACAGTATTTAAATCAAATAATGTCATTAATTTTTAAAAAGTACGCCATTCTTATTTTTCCCATTTTCCCATAAATTGATGTGAACATTGGTAGAAGTGAACACCACCGTTACAATAGTGACTACCTAGCATAGGAATTTGCATAATACGTTGTCATTAGATTGAATAACGAACAGGTAATCTGGCGTTCACCTAACTTTACCTTGCTTTTTAAGTTAATTATTTCACAAAATTTGTGCTTGATGGGTATATGGCAATTTTAGGTTTCTACCCCTATGATATTGTTACTCATAATTTGTTTCTTTTTTTACAGTTTTAATTACTTTGAGTCTGCAATAAGGATTTCTTTTGTTCTCCTTAG
Seq C2 exon
ATTTCTGATTATCAAGCTGACTTCAGTCGGTGGTGGCAGAAAGAGATGAAAGCAGTGAAATTTCCGTCGCAGGGAACAATCTTTGATTATTATGTGGACCACAAAACTAAGAAATTATTGCCCTGGGCTGACAAAATTGCCCAGTTTACTATGGATCCAGATGTGCCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-DNAH11:NM_003777:44
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(3.3=15.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)