DreINT0058332 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10389650-10390407:-
Coord C1 exon
chr6:10390246-10390407
Coord A exon
chr6:10389884-10390245
Coord C2 exon
chr6:10389650-10389883
Length
362 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
CTTTTTTCTTTTTTTTTTAGCCG
3' ss Score
9.75
Exon sequences
Seq C1 exon
GTGGTGCTGTGTTTCTCTCCAGTTGGTTTCACTCTTCGTACACGTGCACGGAAGTTTCCGGCTCTTGTGAACTGCACTGTCATTGACTGGTTTCATCCTTGGCCCCAGCATGCATTGCAGTCCGTCAGCAGCACTTTCATACAAAATATCCCCGACTTGGAG
Seq A exon
GTAACAGAATCTACATTGCAATATTCCGCACAGCACTGCATTGCGTCTTAATCAGGGACAAATTTGGGGGTCAATAGGATTTTTAAAAATACATAGTATTTTTTTTATTTAGCATATAATAACATAAAAATTGGAGGAAAATTAACACAAATATTTAGCGTCTGATTTATTAAAGTACTGCGCATCAAAATGTCCTTACAGAAAATGATCATATATTATATTAATAAAGAAATTATGTATAAATATTTCTAAATAAATAATAAATGAATAATAATATATTAATTATATATTTAGAGTTTTTAACAGAACTGTAGATTTATTAAACAAGATGTTTTCATTTTTCTTTTTTCTTTTTTTTTTAG
Seq C2 exon
CCGGATGTGAGAGTGTCTATTAGTGAGTTTATCTCATTCGCTCACACTTGTGTGAATGAAGTCAGTGTAAAGTATCAGCAGAATGAAAAGCGCTTCAATTACACCACACCCAAGAGCTTCTTGGAGTTCATGAAACTTTACGGCAACCTGCTGGGCTCAAAGAGAACAGAACTGAGACAAAAGACAGAACGCCTGGAGAATGGCCTGCAGAAGCTGCTGACCACGGCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
NA
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTCTTCGTACACGTGCAC
R:
CTTCTGCAGGCCATTCTCCAG
Band lengths:
347-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]