MmuINT0050697 @ mm9
Intron Retention
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119225793-119233763:-
Coord C1 exon
chr12:119233602-119233763
Coord A exon
chr12:119226027-119233601
Coord C2 exon
chr12:119225793-119226026
Length
7575 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGT
5' ss Score
10.2
3' ss Seq
ATGTAATATCTATGTTTCAGCCA
3' ss Score
5.75
Exon sequences
Seq C1 exon
ATGGTTTTTTGTTTCTCACCGGTTGGCCACACACTGCGAGTTAGAGCCCGGAAGTTCCCAGCCATAGTTAACTGCACAGCTATTGACTGGTTTCATGAATGGCCACAGGAGGCTCTGGTCTCAGTCAGCAGGAGGTTCATCGAAGAAATTGAGGGGATTGAG
Seq A exon
GTACGTTGCGTCAGCCTGAGGTAGGTACCCAGCGTGCACAAGTCTCAGTACACTATTGGCAGGAAGCTCGGTCAGCCACTTTCAGTTTCGCAATCTCTGTATCAAATATGTATCTCTTCTTTTATGTTGCTTTTCATTGTATCTGGGTTTTGTGCATTGTTGGGGGTGGGATTCTGGCCTTATGGGGTTATAAGTTATCTTTGTCACTTCTTGATGAGTTTGGTATCTCCAAATACGTTTTTAAATGTCTGTGTGAAAAAAGTAGGTTTGAAGAATAAAGAAAGCAACTGAATCAAGCCTTCCGATTTCCCAGTGGAGTTGAGGCCAGGATCCTTTCTGATTAGAGAGATTGTGTTAGAATGTGACTCCCAGAGAGCTTTGCCCTCACCTCCCATTGAGCAATAAGGTGGGAGTGCCTAGAATAGACCCAGAATTAGTGGAAGTGGCTCTCTCTAAGCCAAAATTGATTGGGGACACTTAAGTAATGTCGTAAGTTCTCACCCTCTCCCTTACTCCAGGAGCCATGATCACCCACATCCAAAGAAACATTATGGCACTTTGTTAAATAGCGTGTCCTCGGGTGGCCAGATGGTTAGAGTCTGGGTATGTTTATGAGATTGACGGTTACTATGCCGCTGTCTTTATTGCGTGGCATGTTATTTTTCCTTTGCGTCTCCTTAAAAAGGGCGTAACCCTATGGGTGTGTGTAGCTTGGGAGTGGTGAAAAGCATTCACTGCTGCATACAGGTTTTCTTTCTCCCCTAAACATGTCTATGAATCTGTTGATCACTGGACTGCAGGGGGAAGCAACATTTAACATGGCAAACACATCTGGGGTGGGAGCACATGCCTGCCTCCTCTCTCCTTCTCTCTTCCACAATCATGTGACAAGTACACGCACAAGGAAACAAGAAAAAAGAAAAGAAAAGAAACGAAAAGAAAAGAAAAGAAAAGAGAAAAGAGAAAAGAGAAAAGAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGTCAAGTCTTCTGAAGTTGGGGGGGGGGTAGGAATTAGATCTGCACATCTAGAGAGCCATTAGTTATGATAAAAGTAGTGTTAAGTGTTACTCCCAGCCCCTAGGACAATCTTCAGGTTCTTTAATGTTGTTGAAATACTGGGGCATCATCTTATCTTCCAACAGCTGAGAAGAGAGGTTGGAAGTTCTGATTCTACAGGAATCAATGCCACATACTACTAGCAGATTTCTAGTTTCCTTGGTTCATTTTTATCAAACTTGGAACAAAAGAAGTGGGCTGGTTTCTGAATGGAGTTTTGATTCTCCTCGGTTGGTAGGAGATCCAAGCTAGCAGCTCCAGAGAAGCACACGCACAGCCTCACAGCCTGCCAGTCTTTGCTGTCCTGTGTCTGTGTCTGCTTTCTCCAGCGGAGCAGCATCTCAGCCTGGCCAGGACTATTGACACCTGCTGGATGAGGCGGGCTTTGCAGTCCCGAGGGCTGCACAAGGTGCTGTGGTCTATCTGACGGTGTCATGCCGCCTCCTATAGGATCCTGGGTGTCAAATAGGAATACTTTTCTTAGCACTTCAGCCTTCCCATCAAGCTGAATTCTGCCTGCTAACAATCAGCCAGATGATTTCCTTTCATTATAAGGTGCTGATTTAACCCTCCCACCTTCCTGATTTGTCACACGGGAAGCACTAATTATAATTCAGAGTACTGTGGGACCACATTCCCCTAAAACCATGTGGTATCTTTTCTGTAGAGGTCAGAAACAGCTTTTACATTTTTGAATGAGTGCTAATTTGATTGCTTTTTTAGTCTTAATTTCCATCAGCAAGACTGAAAGTTATCGGCATAATTTTGTCACTTCTTAATTATTGACCTCATTGGATGAGTGGAAGGTACTTATACAAACAAGGTGACCCCTTTTGGCCATAGACAAGCCATGTTATATATGTTGACATCAGTACATACTCAGGGCTGAGGCAGCCCACAGCCCTGACTGCATCTAACTGAATGGGTATGCTATTTTTTTTCCTGTTACCTGATACGGAACTAAATGACAGCTGACAAATAAAGGACATAAAAGCAGTCTGACACCTAAGTGTCAGTCACTGTGTTGCTCATCAGACACTCCTGTCAATATGCGCTGCCTCTTGCAGTGAGGTAGGAAGAGGCAATATAAGGCAGGAGGGAGGGAAAGTCTTGCATACCACTAGGAGTAGGGTTGAAGGTGCAGATGGAAGCAAGTTGGGGATGTGATGGTTAGTGCACAGGCTCCAGTTAGGAATGCATGGAGCAAAAAAGTAGATGGTATTGGGAACGTAAGAGAAAAACATTGGTTTTGGTTTCTTTAAGGCAAAGTGAGCCTTAGGCATTCTCGAAATCAGGGTCATATGAAAGGACATGTTTTAATGTAAATTTAAAATATGAGCTGACAGGGGAGGGGGAATTCTGTTGCAGGATTTGAGGACAGAAGCAGCCCATGTCACTTGGGCATGATATCTGACTGACAGAGGAAGGAAGGTCTGCCCTCCTGAAGTAATGACACTGCAGTGAGGGCTCAATGCCACGCCACTATTACAGTTAAATGTGGTGCTGCTGCCATGTCTGCATCCCCTACCTTAGAAGGTGTAGCACAGAATGGCAGGGGTGATCCACTCAAATAGAAGTTACCTTTCTGTCAGATTTAGACTTGATGCTTCTCCAGTGCCTACACATGTGTGTGACTACATGTATACACACACACACACACACACACACACACACACTCCTTGTGCCAAACAGGAGGGGCATTACATTTATTGCGTCAGTGATAACTATGCTATATTGATGATTTGGGCCACAATTCTTTCATTGAAATGTCAATTACAAGTGTTAACTTATAAAGTCCGAAGTTGACCATGCGGACAATACGATAACTTTTCAAGTAGAATCTTGGATCCTGTTGGTAGCCCTAATGATCTAGGTTTAGCTGTGCATACTCAACACAAAGAATAAAGACACACGGAATGTGGAAACAGAAAAGAGACTTTGTTTACATTGGTGAGAACATTAAAGAGAGAAATCCTGAGTCCAGCTTAAAGCTACTAGCATAAGGTTAGGTTTAAATAGACTGCATGTGCTTTACCTGATTAGAAAGTCCTGGTCCAAGTGTGGCCCTGCCCACCATGGCCCCTTCAGTGTCTCACTTGCCATGTGTCTTATAAGTTGTAGGAATACTCTCTTTCTGGTGGCTGTCACAGTATCTTCAGCCTTTCCCTACAGTATGATTCCAGGGCCAATTCTAATTCTTTGGGATCTGTTGTTTCATTAGTCTGATAGCTGAGGAGAGGTGTGTGCACGTCCTTTTAGAATATCTAGCTTCCTACACAGTAGTTACACTAAAGCCATTTTGAAGTACCAAGACAAAACCAAAGGAAGATCTTAGGGATCTGCCTAAACTTCATCCTAGCCTCAGCTTCTATCTTCAAATTGGTGGGAAAGCCCCATCACGGTTCACACCCTTCTCCATCATCATCTTTAGCTCTGTGTGTACGTCATTATATATGTAGTGCTCTGTGCCTATTAGGCAAATATAGAATACAGTTTTTTAAAGAATACTGTTTTCCCAACAGGGTTTTTTGTTTTTGTTTTTGTTTTTTCAGCTTTCTAAAGATTAGGAATCCTATCACCCATGAAAGCAGGGTCCGGTTCTTATAGCTGTTTGGGATCTGTGTGTATTGTTCAGCTAGAACCAGCTCTACATAAAAATTCATAGTTTTGTGGCTTTGGGGGATGTGTTAGCCTCACCAGCCACAATATCTCCTGCCTTATCTTCCCACAGGGAAGGGTTATCTGGGGCTGGGGAGATGACTTAATGGGTACCAAGCACTTGCCACACAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTTCTGATTCTAGCACCCACATGAATTCTGGGTGGGGATGGAAGCACTAGAGAGACAGAGAAAGGGGATTCCCAGAGGAAGCCGGCTACCTAAATGATCTGAATCAATGTGCTCTAGGTTCAACTGAAACAGTCTATAATAGGTAGAGAGTGATTAAGGTAGACCTCAACATCAACTTCTGGTACACACTTATGTGTGATGCAAAACACACACTGGATGGATAGGTGGGTGGGTGGAGGATGGATGAAGGATAAATGGATGGAGGATGGATGGATAGATGGATAGATGAGAAAATGGGCTTTCCTGAATTTCCTCTGGACTCTTCATTGCATTAATTCCAAGTCACTTCAATGTGTCCATGTTGTGGAGGAGTCTCCAGGAGCCACCTCTTCTGATAGTAGACCCTCACTTGCACTGGTTACCTCTCTGATCCCAGCCTCATGAGAAAGAAGGGCCCGTCCTTGCATAGGTGACAGATGGCAGCTGATGCTCAAGCCTGTGGATGGATCTCAGAGCCCAGGCTTTCCTTTACTGCATTTGTGCAGATATTTAGAAAGCCTGGAAAAAGAATTGATGCAATGAAACCACTTTTGTGGCAGGAGAAAGCAAGGAGAACACTTAATTCTTCAGACCTGGAAAATGTAACCTAAGTCCTAGGATTCAAACCTTGTTTCTGCTTCATCCGTCTTTATGTTGGGGTGACTGAACTCTGTGAGGGGCTTAAAGGTGCTCAAATGGAATACTGTTCCTCTGTTTTAGTGTTAAATTCTCTGTAACAAGCCTTCTTGCCCTGAATATCTAATTCAGTCTTTTACCAACCCACGAAAGAGTGAATTATAAATAATACATTTTATAACTTAGTATTTTGACATTTAAGTTCAACAAATGATTTCTGAGAAAACATTTCAAGACTCCCTACAAGGCTATGACATAATATCTGACAATATTGCCCTGGGTTTAGCAAAAACAAACAAAAGCAAGCAAAAAACAACAAACTCTTTCCTGTCTTCCGTTTTTCATTTGCCTTTCTCCAAAATCAAATTTCACTTTATAAACTGGTATAGTCTGCTTTGCTGCTCTTGGAAGGAAATAAAATACTTTTTAAAAAAATTCACAGGATTTTCATTTACCCTCTGCTGGCATTCACAACAAGGGCGCTGGGTGCTGGCTTGTAGAGTGGCCTCCTGAGTACTTGGTATGGCAGTGAAAGCCAGTGCTGCAGAACCATCCCACCAGGCACCATAGAGTTTATGTTTCCATGTTTACAGCAAGCTAACTGACGACTGGAAAAATAAACATTCCTTTCTTTATATAAGGAAAAACCCAGCCTTATCTGTGCATTGAATTTTGCAATAGAGACAGCATGGCTTCCCAAAGCGATCTTAGCAGGAAAGCCATGGATTAGGTGCCATTGCATAATGGCACTCGGCTTATTTTTATTTTTGCCTTCACCACTATTGGCTGCAAAAGGACTACAAAGTGTTGTCAACTGGTTCCCCTGAAGGGACAAATCTGGCAGAAAAGATGGTCCTGCCTGCGTCTCTGGAAGTGTGAACTACGGCGCTGGGTTGCTGCAGCCCTTAGCAGCCCCTCTCCGCCCCCCTCAGAAGAAAACTGGAGATAAATGAATGGCAGAATAAATAATTTATGCTAATGAAATTACTGCAATTAGTAGTTCTACAATGACCCTTTTAAAAGCCACAGCTGTTAATGTCAGGAAGTGCTGTCACTACTGACCTTATCATAAGAGAAAGTGACAAATTGAGAATGCAGGGAAGACCAGTCATCAAAGAGGTCTGTTCTGGAACGATTAGAGTTTTCTGAAAAACAGTGTGAATTACAACCAGCTGCTCCCTGGCTCCGTGAGACTCCCATGCTGAGCCATTTTGTTAAGCCCGATAACAATAGTTATTTTGCCCCACTGAGACAAGTTGTGTCGGGCCACTTCCAGCTCTCCCGGAAGCCACTCTTTCCATCAGAGATTTACAAATGAAACTGTTGTTAAAAGGAGCATTCAGGGCTGCTGAGGAGCCTCCTCATAAGGATCATGGTTGGGCAGAAGCCAGCTTTTCTTTTTTTTCTTTGTAAGGTTACACTTGGCTGAGGAGGTGTTTGTCTGTATCCCAGGAAGGTATGTGTGAAAGTTCTTGTCAAAGCAAGACAGGATGGGAGCAGACTTGTGCGTAGTTATATGGGAGCCAAGCTGTTTTGAAAATAAAGTCCTCAGGGAAATATGATGCCTGTGACATTTATAGACACTCATAAATTTTATTTTCTGAGTCCACTAATTGCTAATCCTCATGCATCTTGGGTCCCCTGGAATCTAAGACAATTCAAGTTTTGTATCCCCGAGTTTTGCTTTGAACACACATTCTTTCTGTGACTAGTGAGAGATTTTTAACCAGCCCAACGGTGCACTTATGTGAAGATTTTACCTACGTTTGGGGTCTGTCGTGAGGTTAGGGATCTGTGTGTTTAAGGACACCACAGAGGAGCAGTCCTTTGCAGTGCTGCTCACACTTCTGGTTGCAATATTGATGGTCCAGGTTTGAAACGTTTAACTGCATCATCGGCCACTTGTGTGCAATTTTCCTGGAGCTGCCTGAACGTTATTGACAACACTTTGGTAAATTATGTGTGACTTTCCAAAGAGTTGGTGTAGCTCATTTAATTCATATTAATTGATTTTTAGGCTTCCCTTGATTAATTGAACCAGGTTCATCTTGTACAGAATGCAATAAATAATCATTAGAATGAGGGAGATGTGGCTGTACAAATTAAAAAGTTAACTATTCCAGAAGTCACAGAGGACACATGGAAGGGACTGCAAGCGATCTGCAGGGACTCTGTGTGGGGTTGGGGGGGGGGAGTAGAGGGGGTGGGAGGTGGGGAAGCTGCAGGGTGGGGGAGGGGTGGGAGATGGGGGAGAGGGAAGGTGTGAGGGGAGGGGGTGGGATGTGGGGGAGTGGGGAGAGTACAGGGGGCAGGAAGTAGGGGAGGGGGAGCTGTGGTGGAGGGAGGGGGTGGGAGATGGGGGAGAGATGTTCTGCCTTATGCTTGTTTTGTTGTTGATGTTCACATCTCCAGATAAGAATAGAAATGACCCTCAGAATGAGTGGTTTGGATAGCTTGCCCATTCATTCAGTTTGACATGGCTTCTCATAAAGTCCTCCACTTGTTTTGTGTCCCCACTTTGTAGTGATTATTTTTGCCTAAAGTTCAGCTTGAAAGCAACATCCAGTCCCCAAAAATATCCCTTCAAATATTGTTATGCATCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCTCCTTTCCTTTCCTTGCTATGCACTTGATAGGTAAAGATCAAGTTGTAAAGATTGGGACTTTGTCTTTTCTGTTGGTTTCTGGGTTTTGGTTGAGAACCACATAAAAACATCCTTTGCCCTACCTAGCATGCCGGTGAGGAAGGTCAAATGCTTCATAGTTACCCCCTATACTGTGGGTGTCTCATGAAGATGAAGTAAAATTTCCTAACTTCTACTGTAATCCTCCCTGGCTTAAAAAAAAAATACTGTATAATTTTTTGGTGTTTTTTCCCCCTTTTTATTTTCTAAATTATATTTTCAACTTGAAAGGATTTCATGAGAAATGTAATATCTATGTTTCAG
Seq C2 exon
CCACAGCACAAAGATTCTATCAGCCTTTTCATGGCTCATGTTCACACCAGTGTAAAGGAAGTGAGTGCCTGGTACTACCAGAACGAGAGAAGATACAACTATACCACCCCCAGGAGTTTCTTAAAACAAATATCACTGTTTAAGAGCCTGCTGAAGAAGAAGCGAGAAGAGGTAAAACAGAAGCAGGAGCACCTGGGGAATGGAATCCAGAAGCTGCAGACTACAGCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-Dnahc11:NM_010060:55
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
NA
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: