MmuEX0014954 @ mm9
Exon Skipping
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119225793-119246580:-
Coord C1 exon
chr12:119245975-119246580
Coord A exon
chr12:119233602-119233763
Coord C2 exon
chr12:119225793-119226026
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTCCCCCCTCACCCCTACAGATG
3' ss Score
10.21
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
GGCATTCTTTTTGGCCAGAGTCCGACAACAGCTCAAAGTGAGAAATGTTTGCTTTACCTTTGTATTGCTTTAAAGCTGTTGTTGACACTTGAATATGCATCTCAGTCAGGACACATGTTATGGTTTGAGTTTCAGTGACTTCTTTGAAGGAACTGGTGCATTTATCTAAGCTGTGTCTGTAGTGTGTGTCCCTGAGACCAAGTGTGGTGTTGAGCCCCCGGGAAGCCCTGGGCTGGGCAGTATATTCAGTGTGATATTAAAGCCACATTCCTCTGTCTTAAAGGAGCTGACATTGTTGTAGGAAGTAAGGCATGTCACCAAGAACTTTCCTATGGGACAAGTATAAATAGGTCCATGGGAAGGCACAAGGGAACAGCCTCCTCCTTAATGGGAATAGGTTTATCCCTGGAGGAATGGTGTTCCATTGTCTGGCACTGGTAGGAACTTAAGTCAGGGGCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq A exon
ATGGTTTTTTGTTTCTCACCGGTTGGCCACACACTGCGAGTTAGAGCCCGGAAGTTCCCAGCCATAGTTAACTGCACAGCTATTGACTGGTTTCATGAATGGCCACAGGAGGCTCTGGTCTCAGTCAGCAGGAGGTTCATCGAAGAAATTGAGGGGATTGAG
Seq C2 exon
CCACAGCACAAAGATTCTATCAGCCTTTTCATGGCTCATGTTCACACCAGTGTAAAGGAAGTGAGTGCCTGGTACTACCAGAACGAGAGAAGATACAACTATACCACCCCCAGGAGTTTCTTAAAACAAATATCACTGTTTAAGAGCCTGCTGAAGAAGAAGCGAGAAGAGGTAAAACAGAAGCAGGAGCACCTGGGGAATGGAATCCAGAAGCTGCAGACTACAGCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'55-55,'55-54,56-55
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.5=100)
A:
PF127802=AAA_8=FE(19.8=100)
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTTCCATTGTCTGGCAC
R:
CGCTTCTTCTTCAGCAGGCTC
Band lengths:
250-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: