DreEX6040406 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19441050-19448701:-
Coord C1 exon
chr16:19448559-19448701
Coord A exon
chr16:19448295-19448456
Coord C2 exon
chr16:19441050-19441283
Length
162 bp
Sequences
Splice sites
3' ss Seq
TGTATTGTATGTGTTTGTAGGTC
3' ss Score
8.33
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GTGAGATTCCTGATCTCTTGAGTGAAGAGGAGGTGGAAGGTGTCAGGAAAGCAGTGAAGAGTGAAGTGCGGGATCTAGGTCTGCTGGACAACAACGAAAACTGCTGGAGGTTCTTTATGAATCGAGTGCGACATCAGCTCAAG
Seq A exon
GTCGTGCTATGCATGTCTCCAGTTGGTAATGCTCTGCGCCTGCGTGTCCGGCGTTTCCCGGCTCTGCTGAGCTGCACCACTCTGGACTGGTTCCAGGAATGGCCCCAGGAGGCTCTTCAGTCTGTCAGCTTAAAGTACCTGCAGGAAATCCCAAGTATTGAG
Seq C2 exon
CCGACCATTTGGGAATCCATCAGTCTTTTCATGGCCCACGCGCACACCAGCGTCAAGCGGGTTAGCGAGCGTTACTGCTGCAACGAGAAGAGGCACAACTACAGCACATCTAAGAGCTTCCTGGAGCAGCTGAGGCTTTACAAGAGTCTACTGGAAAACAGGGAGAAGGAACTGCATCAGAGACTTGACAGGCTTCAGTCTGGCCTTCAGAAAATCAAGAGTACTGCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'29-32,'29-31,31-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(27.9=97.6)
A:
PF127802=AAA_8=FE(19.8=100)
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAAGGTGTCAGGAAAGC
R:
GCTGCTCCAGGAAGCTCTTAG
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]