HsaEX6007390 @ hg19
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21789840-21813617:+
Coord C1 exon
chr7:21789840-21789982
Coord A exon
chr7:21805046-21805207
Coord C2 exon
chr7:21813384-21813617
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTGCCCCCATGTCTCCACAGATC
3' ss Score
12.05
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
GAGAAATCCCAGATCTGTTCAGCGATGAAGATGTGGACAAGATAATTTCTGGAATTCATAATGAAGTTCATGCTCTGGGCATGGTAGACTCCAGGGAAAACTGTTGGAAATTCTTTATGGCCAGGGTGCGACTACAGCTCAAA
Seq A exon
ATCATTTTGTGTTTCTCTCCAGTTGGTCGCACGCTGAGAGTTAGAGCTCGGAAGTTCCCAGCCATAGTTAACTGCACGGCTATTGACTGGTTTCATGCGTGGCCGCAGGAGGCTCTGGTCTCCGTCAGCAGGAGGTTCATTGAGGAAACCAAGGGAATTGAG
Seq C2 exon
CCAGTGCACAAAGACTCTATTAGCCTTTTCATGGCACATGTTCACACCACTGTAAATGAAATGAGTACCAGATATTACCAGAATGAGAGAAGACACAACTATACCACCCCAAAGAGTTTTCTAGAACAAATATCACTGTTTAAGAACCTGTTGAAGAAGAAGCAAAATGAGGTATCCGAGAAAAAAGAACGCCTGGTGAACGGCATCCAAAAGCTAAAAACCACAGCCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'61-61,'61-60,62-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.5=100)
A:
PF127802=AAA_8=FE(19.8=100)
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTTTATGGCCAGGGTGCG
R:
TTTTGGATGCCGTTCACCAGG
Band lengths:
246-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)