BtaEX6026607 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30625637-30657955:+
Coord C1 exon
chr4:30625637-30625779
Coord A exon
chr4:30646021-30646182
Coord C2 exon
chr4:30657722-30657955
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTGCCCCCGTGTCTCCACAGATC
3' ss Score
13.09
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
GGGAGATTCCTGATCTGTTCAGTGATGAAGATGTAGACAAGATAATTTCTGGAGTTCGTGATGAAGTTCGTGGTCTGGGCATGGTGGACTCCAGAGAAAACTGTTGGAAATTCTTTTTGTTCCGGGTGCGACGACAACTCAAA
Seq A exon
ATCATTTTGTGTTTCTCTCCGGTTGGTCACACGCTGAGAAGTAGAGCTCGGAAGTTCCCAGCCCTGGTTAACTGCACGGCTGTTGACTGGTTCCATGCTTGGCCCCAGGAGGCTCTGGTCACAGTCAGCAGGAGGTTCATTGAGGAAACCAAGGGAACTGAG
Seq C2 exon
CCCCAGGATAAAGACTCTATTAGCCTTTTCATGGCCCACGTTCACACTAGTGTACATGAAATGAGTACCAGGTATTACCAGAATGAGAGAAGACACAACTATACGACCCCAAAGAGTTTTCTGGAACAGATATCACTGTTTAAGAACCTGTTGAAAAAGAAACAAGAAGCGGTGTCCCAGAAGAAAGAGCACTTGGTGAATGGTGTCCAGAAGCTGAGAACCACAGCCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'65-70,'65-68,68-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.048
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.5=100)
A:
PF127802=AAA_8=FE(19.8=100)
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTTTTGTTCCGGGTGCGA
R:
TGGACACCATTCACCAAGTGC
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]