GgaEX1020250 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1093478-1097559:+
Coord C1 exon
chr18:1093478-1093620
Coord A exon
chr18:1096486-1096647
Coord C2 exon
chr18:1097326-1097559
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTTGGGGCCCCTCAGGTT
3' ss Score
6.9
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTGAAATCCCTGATCTCTTCCCGGATGATGAAGTTGAAAACATCATCAACAGCGTGAGGAATGAAGTCAAAGGCCAGGGCCTGGTGGACTCCAGAGAGACTTGCTGGAAGTTCTTCATAGAGCGTGTTCGACGACAGCTGAAG
Seq A exon
GTTGCGTTGTGTTTTTCGCCCGTTGGCAACAAGCTGCGGGTCCGCAGCAGGAGGTTCCCCGCCATCGTGAGCTGCACGGCGATCGATTGGTTCCAGGAGTGGCCACAGGAGGCCCTCGAGTCCGTCAGCCTCCGCTTCCTGCGAGACACGGACAGCGTGGAG
Seq C2 exon
GCTCCAGTGAAAGAGTCAATAAGCAAATTCATGGCCTATGTCCACACAAGTGTCAACGAGATGTCCCAACTGTACCTGAGCAACGAGCGGCGGTACAACTACACCACCCCCAAATCATTCCTCGAGCAGATCAAACTCTATCAGAATTTGCTACTGAAAAAGAGAAAGGATTTAACAGCAAAAATGGAGAGGCTGGAGAATGGCCTGGAGAAGCTCAACAGTACATCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'52-53,'52-52,53-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.5=100)
A:
PF127802=AAA_8=FE(19.8=100)
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGATCTCTTCCCGGATGA
R:
TGGGGGTGGTGTAGTTGTACC
Band lengths:
248-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]