RnoEX6047741 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52465900-52466992:-
Coord C1 exon
chr10:52466850-52466992
Coord A exon
chr10:52466290-52466451
Coord C2 exon
chr10:52465900-52466133
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTTCCGATGTCTCAGGTG
3' ss Score
8.57
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTGAGATCCCAGATCTCTACTCTGAGGAGGAGGAGGAGAACATCATAAACAATGTCAGGAATGAGGTCAAAAGCCAGGGACTCATTGACAGCAGAGAGAACTGCTGGAAGTTCTTCATAGAGAGAGTCCGGAGACAACTTAAG
Seq A exon
GTGACTCTCTGTTTCTCCCCTGTGGGGAACAAGCTGAGAATTCGAAGCAGGAAGTTCCCAGCCATTGTGAACTGTACTGCTATCAACTGGTTCCACGAGTGGCCTCAGGAGGCACTGGAGTCTGTGAGCCTCCGTTTCTTGCAGAATACAAAGAACATTGAG
Seq C2 exon
CCTGCAGTGAAGCAATCGATTAGCAAGTTCATGGCCTTTGTCCACATAAGTGTCAACAAGATATCCCAGTCATACCTGATCAATGAGCAGCGCTACAACTACACCACTCCCAAGTCCTTTCTGGAGTTCATCAGACTATACCAGAGCTTGCTGGAGAGGAATGGAAAAGAGCTCCAGTCCAAGGTGGAAAGGCTGGAGAATGGGCTGTTAAAGCTGCACAGCACCTCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'68-63,'68-62,69-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.5=100)
A:
PF127802=AAA_8=FE(19.8=100)
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCAAAAGCCAGGGACTCA
R:
TCCATTCCTCTCCAGCAAGCT
Band lengths:
245-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]