BtaEX6087251 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31149219-31150905:+
Coord C1 exon
chr19:31149219-31149361
Coord A exon
chr19:31150365-31150526
Coord C2 exon
chr19:31150672-31150905
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCATCTTTCTGCCTTCTCAGGTG
3' ss Score
10.66
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GAGAGATCCCAGATCTCTACTCTGATGATGAGGTTGAAAACATCATAAGCAACGTGAGAAATGAGGTCAAGAGCCAAGGTCTGGCTGACAATAGAGAAAATTGCTGGAAGTTTTTCATAGAGCGAGTCCGACGGCAGCTGAAG
Seq A exon
GTGACTCTTTGCTTCTCCCCGGTGGGGCCCAACCTGAGGGTCCGCAGCAGGAAGTTCCCCGCCATCGTGAACTGCACGGCCATTGTCTGGTTCCACGAGTGGCCAAAACAGGCCCTGGAGTCTGTCAGCCTCCGCTTCCTGCAGAACACGGAAGGCGTTGAG
Seq C2 exon
ACCACAGTCAAGCCATCAGTTAGTGAGTTCATGGCTTTCGTCCACACAAGTGTCAACCACACCTCCCAGTCCTATCTGAGCAACGAGCAGCGCTACAACTACACAACGCCCAAATCATTCCTGGAGTTCATCAGACTCTACCAGAGCCTGCTGCGCAGGAACGGGAGGGAGCTCAGGTCCAAGATGGAGCGGCTGGAGAACGGGTTGCTGAAGCTCCACAGCACCTCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'64-74,'64-73,65-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.5=100)
A:
PF127802=AAA_8=FE(19.8=100)
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATAGAGCGAGTCCGACGG
R:
CTTCAGCAACCCGTTCTCCAG
Band lengths:
243-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]