RnoEX6047740 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52466290-52476674:-
Coord C1 exon
chr10:52476551-52476674
Coord A exon
chr10:52466850-52466992
Coord C2 exon
chr10:52466290-52466451
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCCTTTTATCCCCAGGTG
3' ss Score
12.96
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTGGACCTGGCCAGCCTCTGTTTGAAAGCTGGGGTAAAAAATCTCAGTACCGTGTTCCTGATGACTGATGCCCATGTGGCTGATGAGAGGTTCCTGGTGCTCATCAATGATCTCCTGGCATCTG
Seq A exon
GTGAGATCCCAGATCTCTACTCTGAGGAGGAGGAGGAGAACATCATAAACAATGTCAGGAATGAGGTCAAAAGCCAGGGACTCATTGACAGCAGAGAGAACTGCTGGAAGTTCTTCATAGAGAGAGTCCGGAGACAACTTAAG
Seq C2 exon
GTGACTCTCTGTTTCTCCCCTGTGGGGAACAAGCTGAGAATTCGAAGCAGGAAGTTCCCAGCCATTGTGAACTGTACTGCTATCAACTGGTTCCACGAGTGGCCTCAGGAGGCACTGGAGTCTGTGAGCCTCCGTTTCTTGCAGAATACAAAGAACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'65-62,'65-61,68-62=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(15.3=100)
A:
PF127802=AAA_8=FE(17.5=100)
C2:
PF127802=AAA_8=FE(19.8=100)
Main Skipping Isoform:
ENSRNOT00000005583fB4275
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAGCCTCTGTTTGAAAG
R:
AGAAACGGAGGCTCACAGACT
Band lengths:
256-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]