HsaEX6021132 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11713563-11725916:+
Coord C1 exon
chr17:11713563-11713686
Coord A exon
chr17:11725237-11725379
Coord C2 exon
chr17:11725755-11725916
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGTGCTCCATTTTTTCCCAGGGG
3' ss Score
9.2
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATGGACCTGGCCAGCCTGTGTCTGAAAGCTGGAGTGAAGAATCTCAACACAGTGTTTCTCATGACTGATGCCCAAGTGGCTGATGAGAGGTTCCTTGTGCTCATCAATGATCTTTTGGCATCTG
Seq A exon
GGGAGATCCCAGATCTCTACTCTGATGATGAAGTTGAAAACATCATAAGCAATGTGAGGAATGAAGTCAAGAGCCAGGGTCTGGTTGACAACAGAGAGAACTGTTGGAAGTTCTTTATAGATCGGATCCGGCGACAGCTGAAG
Seq C2 exon
GTGACTCTCTGTTTCTCCCCTGTGGGAAACAAGCTAAGAGTCCGCAGCAGGAAGTTCCCAGCCATTGTGAACTGCACAGCCATCCACTGGTTCCACGAGTGGCCTCAGCAAGCATTGGAGTCTGTCAGCCTCCGCTTCTTGCAGAACACAGAGGGCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'44-46,'44-45,45-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(15.3=100)
A:
PF127802=AAA_8=FE(17.5=100)
C2:
PF127802=AAA_8=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTGTCTGAAAGCTGGAG
R:
AGGCTGACAGACTCCAATGCT
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)