GgaEX6015769 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1091358-1096647:+
Coord C1 exon
chr18:1091358-1091481
Coord A exon
chr18:1093478-1093620
Coord C2 exon
chr18:1096486-1096647
Length
143 bp
Sequences
Splice sites
3' ss Seq
AATGTACCCTTTTCTCTTAGGTG
3' ss Score
8.7
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCAGACCTGGCAAACCTGTACCTGAAGGCTGGTGTGAAGAACATAGGCACTGTGTTCCTGATGACCGACGTGCAGGTGGCTGATGAGCAGTTCTTGGTGCTGGTAAATGACTTGTTAGCATCAG
Seq A exon
GTGAAATCCCTGATCTCTTCCCGGATGATGAAGTTGAAAACATCATCAACAGCGTGAGGAATGAAGTCAAAGGCCAGGGCCTGGTGGACTCCAGAGAGACTTGCTGGAAGTTCTTCATAGAGCGTGTTCGACGACAGCTGAAG
Seq C2 exon
GTTGCGTTGTGTTTTTCGCCCGTTGGCAACAAGCTGCGGGTCCGCAGCAGGAGGTTCCCCGCCATCGTGAGCTGCACGGCGATCGATTGGTTCCAGGAGTGGCCACAGGAGGCCCTCGAGTCCGTCAGCCTCCGCTTCCTGCGAGACACGGACAGCGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'51-52,'51-51,52-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(15.3=100)
A:
PF127802=AAA_8=FE(17.5=100)
C2:
PF127802=AAA_8=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTGGCAAACCTGTACCT
R:
GACTCGAGGGCCTCCTGTG
Band lengths:
244-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]