MmuEX6086225 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65947469-65970128:-
Coord C1 exon
chr11:65969966-65970128
Coord A exon
chr11:65955641-65955783
Coord C2 exon
chr11:65947469-65947729
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGTGCCCCACTTATCCCCAGGTG
3' ss Score
9.91
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
CTGTCACATCAACCGAATCCTGGAGTCCCCTCGAGGAAATGCCCTGCTAGTTGGTGTAGGTGGGAGTGGTAAGCAGAGTCTGACAAAGCTGGCAGCTTTTATCAGTTCCATGGATGTATTCCAGATCACCCTTCGCAAAGGCTACCAAATCCCTGACTTCAAG
Seq A exon
GTGAGATCCCAGATCTCTACTCTGATGAGGAAGAGGAGAACATCATAAACAATGTGAGAAATGAGGTCAAAAGCCAGGGACTCATGGACAGCAGGGAGAACTGCTGGAAATTCTTCATAGAGAGAGTCCAGCGACAACTTAAG
Seq C2 exon
GTGGATGATCTGAAAGCGAAGCTTGCCACCCAGGAAGTGGAGCTGAGGCACAAGAATGAAGATACAGACAAGCTGATTCAGGTGGTGGGTGTGGAGACCAGCAAAGTGAGCAGAGAGAAAGCCATTGCTGACGAGGAGGAGCAGAAGGTGGCCCTGATCATGCTGGAGGTGCAGCAGAAACAGAAAGACTGTGAAGAGGACCTGGCTAAGGCCGAGCCAGCCCTGACCGCAGCGCAGGCGGCCCTCAACACTCTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752_MULTIEX4-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.149
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.1=100)
A:
PF127802=AAA_8=FE(17.5=100)
C2:
PF127772=MT=FE(25.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGTCCCCTCGAGGAAAT
R:
CTGCTCACTTTGCTGGTCTCC
Band lengths:
257-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types