RnoEX0028676 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52466850-52487345:-
Coord C1 exon
chr10:52487183-52487345
Coord A exon
chr10:52476551-52476674
Coord C2 exon
chr10:52466850-52466992
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGACCCTGATGATCTTGCAGGTG
3' ss Score
9.11
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
CTGTCACATCAACCGAATCCTGGAGTCCCCTCGAGGAAATGCCCTGCTAGTTGGTGTAGGTGGAAGTGGTAAGCAGAGTCTGACCAGGCTGGCAGCTTTTATCAGTTCCATGGATGTGTTTCAGATCACTCTTCGAAAAGGCTATCAAATCCCTGACTTCAAG
Seq A exon
GTGGACCTGGCCAGCCTCTGTTTGAAAGCTGGGGTAAAAAATCTCAGTACCGTGTTCCTGATGACTGATGCCCATGTGGCTGATGAGAGGTTCCTGGTGCTCATCAATGATCTCCTGGCATCTG
Seq C2 exon
GTGAGATCCCAGATCTCTACTCTGAGGAGGAGGAGGAGAACATCATAAACAATGTCAGGAATGAGGTCAAAAGCCAGGGACTCATTGACAGCAGAGAGAACTGCTGGAAGTTCTTCATAGAGAGAGTCCGGAGACAACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171_MULTIEX5-3/4=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.1=100)
A:
PF127802=AAA_8=FE(15.3=100)
C2:
PF127802=AAA_8=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCCTGGAGTCCCCTCGAG
R:
CTGCTGTCAATGAGTCCCTGG
Band lengths:
243-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]