DreEX6020689 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10393259-10395534:-
Coord C1 exon
chr6:10395372-10395534
Coord A exon
chr6:10395142-10395265
Coord C2 exon
chr6:10393259-10393401
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGTCTTTCCCTGTAGAGT
3' ss Score
12.04
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
Exon sequences
Seq C1 exon
TTGCAGGATAAGTCGTATTCTTGAGTCTCCTGTGGGCAATGCATTGCTTATTGGAGTAGGTGGTAGTGGGAAACAGAGTCTCTGTCGGTTGGCTGCTTTTCTCAGCGTCCTTGAAGTATTTCAGATCACACTGAGAAAAGGTTACGGCATCAGCGACCTTAGG
Seq A exon
AGTGATATTGCTGCATTGTATATAAAGGTGGGAGTGAAGAACATTGGCACAGTCTTCCTCCACACTGATGCCCAGATTCCAGATGAAAGATTCCTGGTCCTGATCAACGACATGCTAGCATCAG
Seq C2 exon
GGGACATCCCTGACCTGTTTAGTGAGGAAGAAATTGATATGATCGTCACGTCTATTCGTGTGGAGTTGAGGGCGCTTGGTTTGCTGGACACTCGTGAAAACTGCTGGAACTTCTTCATTGATCGTATACGCAGACAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'48-50,'48-49,49-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.1=100)
A:
PF127802=AAA_8=FE(15.3=100)
C2:
PF127802=AAA_8=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGAGTCTCCTGTGGGCAA
R:
TTCACGAGTGTCCAGCAAACC
Band lengths:
243-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]