MmuEX6083441 @ mm9
Exon Skipping
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119246438-119248624:-
Coord C1 exon
chr12:119248462-119248624
Coord A exon
chr12:119247208-119247331
Coord C2 exon
chr12:119246438-119246580
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATGTTGCCCTTCCCTTACAGGTA
3' ss Score
12.83
5' ss Seq
CGGGTGATT
5' ss Score
3.51
Exon sequences
Seq C1 exon
GTGTAGAATCAGCCGCATCCTTCGGATCCCTCAAGGCCACGCCCTCTTGATTGGCGTTGGAGGCAGTGGCAAGCAGAGCCTGTCCCGGCTGGCAGCTTACATCTGCAGCTTGGAGGTCTTTCAGATCACTCTGACGGAAGGCTATGGGGCCCAAGAGCTTCGG
Seq A exon
GTAGATCTGGCCAATTTGTACGTCAGAACTGGAGCCAAAAACATGCCCACCGTGTTCCTGCTGACAGATGCCCACGTTCTAGATGAGAGCTTCCTCGTGCTGATTAACGACTTGCTGGCATCGG
Seq C2 exon
GAGACATCCCAGATCTGTTCAGTGATGAAGATATGGACAAGATCATTTCCGGGATTCGTAATGAAGTTCGAGGCCTCGGCTTAGTGGACTCCAGGGAAAACTGTTGGGCATTCTTTTTGGCCAGAGTCCGACAACAGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'52-53,'52-52,53-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.1=100)
A:
PF127802=AAA_8=FE(15.3=100)
C2:
PF127802=AAA_8=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTTGATTGGCGTTGGAGG
R:
GTTGTCGGACTCTGGCCAAAA
Band lengths:
256-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: