HsaEX6007392 @ hg19
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21788198-21789982:+
Coord C1 exon
chr7:21788198-21788360
Coord A exon
chr7:21789296-21789419
Coord C2 exon
chr7:21789840-21789982
Length
124 bp
Sequences
Splice sites
3' ss Seq
GTGATGGCCTTTCCTTACAGGTA
3' ss Score
10.77
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
GTGTCGCATCAGCCGGATCTTACGAACCCCTCAGGGCTGTGCTCTCTTGGTTGGAGTTGGGGGCAGTGGCAAGCAGAGCTTGTCCAGGCTGGCAGCTTACCTTCGTGGCCTTGAGGTCTTTCAGATCACTCTGACCGAGGGCTATGGAATCCAGGAACTTCGG
Seq A exon
GTAGATCTTGCCAATTTGTACATCCGAACTGGAGCCAAGAACATGCCCACTGTGTTCCTGCTGACAGATGCCCAGGTTCTAGATGAGAGCTTCCTCGTGCTGATTAATGACTTGCTGGCATCAG
Seq C2 exon
GAGAAATCCCAGATCTGTTCAGCGATGAAGATGTGGACAAGATAATTTCTGGAATTCATAATGAAGTTCATGCTCTGGGCATGGTAGACTCCAGGGAAAACTGTTGGAAATTCTTTATGGCCAGGGTGCGACTACAGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'59-59,'59-58,60-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.1=100)
A:
PF127802=AAA_8=FE(15.3=100)
C2:
PF127802=AAA_8=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCTTGGTTGGAGTTGGG
R:
CGCACCCTGGCCATAAAGAAT
Band lengths:
253-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)