BtaEX6026609 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30623831-30625779:+
Coord C1 exon
chr4:30623831-30623993
Coord A exon
chr4:30625095-30625218
Coord C2 exon
chr4:30625637-30625779
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATGGCCTCTGCTTCTTACAGGTA
3' ss Score
9.71
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
GTGTCGCATCAGCCGCATCCTGCAGTCCCCTCAGGGTTATGCGCTCTTGATCGGAGTGGGCGGCAGTGGCAAGCAGAGCCTGTCCCGCCTGGCAGCTTACGTTTGCAGCCTCGAGGTCTTCCAGATCACTCTGACCCAAGGCTTTGGGATCCAGGAACTTCGG
Seq A exon
GTAGACCTTGCCAATCTGTACATCAGAGCCGGAGCCAAGAACATGCCCACCGCGTTCCTGCTGACAGATGCCCAGGTTCTAGATGAGAGCTTTCTCGTGCTGATTAATGACTTGCTGGCATCAG
Seq C2 exon
GGGAGATTCCTGATCTGTTCAGTGATGAAGATGTAGACAAGATAATTTCTGGAGTTCGTGATGAAGTTCGTGGTCTGGGCATGGTGGACTCCAGAGAAAACTGTTGGAAATTCTTTTTGTTCCGGGTGCGACGACAACTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'63-66,'63-64,64-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.1=100)
A:
PF127802=AAA_8=FE(15.3=100)
C2:
PF127802=AAA_8=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCGCTCTTGATCGGAGTG
R:
TCGCACCCGGAACAAAAAGAA
Band lengths:
257-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]