RnoEX6030090 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145912110-145914303:-
Coord C1 exon
chr6:145914141-145914303
Coord A exon
chr6:145912875-145912998
Coord C2 exon
chr6:145912110-145912252
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATGGTGTCCTTTCCTTACAGGTA
3' ss Score
12.15
5' ss Seq
CGGGTGATT
5' ss Score
3.51
Exon sequences
Seq C1 exon
GTGCCGAATCAGCCGCATTCTTCGGACCCCTCAAGGCCACGCCCTCTTGGTTGGAGTTGGAGGCAGTGGCAAGCAAAGCCTGTCTAGGCTGGCAGCTTACATCTGCAGCTTGGAGGTCTTTCAGATCACTCTGACAGAAGGCTATGGGACCCAAGATCTCCGG
Seq A exon
GTAGATCTGGCCAATTTGTACGTCAGAACTGGAGCCAAGAACATGCCCACCGTGTTCCTGCTGACAGATGCCCACGTTCTAGATGAGAGCTTCCTCGTGCTGATTAATGACTTGCTGGCATCGG
Seq C2 exon
GAGACATCCCAGGTCTGTTCAGTGACGAAGATACCGACAAGATCATTTCTGGGATTCGTAATGAAGTTCGAGGCCTCGGCATAACAGACTCCAGGGAGAACTGTTGGGCATTCTTTTTGGCCAGAGTCCGACTACAGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'69-69,'69-67,70-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.1=100)
A:
PF127802=AAA_8=FE(15.3=100)
C2:
PF127802=AAA_8=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGGTTGGAGTTGGAGGC
R:
TGTAGTCGGACTCTGGCCAAA
Band lengths:
256-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]