DreEX6040404 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19448559-19467221:-
Coord C1 exon
chr16:19467059-19467221
Coord A exon
chr16:19459988-19460111
Coord C2 exon
chr16:19448559-19448701
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCTGTTTTATTTCAGATG
3' ss Score
11.51
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
TTGTCGGATCAGTCGCATCCTGGCCTGTCCGAGAGGCCATGCCCTGCTTATAGGTGTGGGTGGCAGTGGCAAACAGAGCCTGACCCGCCTTGCCGCACACCTCTCCAACATGGACGTGTTCCAGCCCAAACTCAGTAAGGGATACGGCATACAGGATCTGAAG
Seq A exon
ATGGATTTGGCCAGACTGTACATAAAGACAGGAGTGAAAAATATACCCACAGTCTTGCTCCTCACAGACGCTCAGATCCCAGAGGATCAGTTCTTCGTCATCATCAGCACCCTGATCTCGTCAG
Seq C2 exon
GTGAGATTCCTGATCTCTTGAGTGAAGAGGAGGTGGAAGGTGTCAGGAAAGCAGTGAAGAGTGAAGTGCGGGATCTAGGTCTGCTGGACAACAACGAAAACTGCTGGAGGTTCTTTATGAATCGAGTGCGACATCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'27-29,'27-28,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.1=100)
A:
PF127802=AAA_8=FE(15.3=100)
C2:
PF127802=AAA_8=PU(27.9=97.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCGGATCAGTCGCATCCT
R:
TGTCCAGCAGACCTAGATCCC
Band lengths:
253-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]