GgaEX6015770 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1107262-1111333:+
Coord C1 exon
chr18:1107262-1107424
Coord A exon
chr18:1109071-1109194
Coord C2 exon
chr18:1111191-1111333
Length
124 bp
Sequences
Splice sites
3' ss Seq
ACTTGCTTTTCAACCTCCAGGCA
3' ss Score
9.43
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
TTGCCGCATCAACCGTATCCTGGAGTCCCCCAGAGGAAATGCGCTCTTGGTCGGCGTGGGCGGCAGCGGCAAGCAGAGCCTGACCAGGCTGGCAGCCTTCATCAGCTCTCTGGAGGTCTTCCAGATCACTTTGAGGAAAGGCTACGGGATCCCTGACCTGAAG
Seq A exon
GCAGACCTGGCAAACCTGTACCTGAAGGCTGGTGTGAAGAACATAGGCACTGTGTTCCTGATGACCGACGTGCAGGTGGCTGATGAGCAGTTCTTGGTGCTGGTAAATGACTTGTTAGCATCAG
Seq C2 exon
GTGAAATCCCTGATCTCTTCCCGGATGATGAAGTTGAAAACATCATCAACAGCGTGAGGAATGAAGTCAAAGGCCAGGGCCTGGTGGACTCCAGAGAGACTTGCTGGAAGTTCTTCATAGAGCGTGTTCGACGACAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'37-40,'37-38,38-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.1=100)
A:
PF127802=AAA_8=FE(15.3=100)
C2:
PF127802=AAA_8=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCCCCCAGAGGAAATG
R:
AGCAAGTCTCTCTGGAGTCCA
Band lengths:
248-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]