HsaEX6021133 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11807732-11822062:+
Coord C1 exon
chr17:11807732-11807894
Coord A exon
chr17:11810246-11810369
Coord C2 exon
chr17:11821920-11822062
Length
124 bp
Sequences
Splice sites
3' ss Seq
GATATTGACCATTCCTACAGATG
3' ss Score
6.36
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTGCCATATCAATCGCATCTTGGAGTCCCCGCGGGGAAATGCTCTGCTGGTTGGTGTAGGTGGGAGCGGCAAGCAGAGCCTGACAAGGCTGGCAGCTTTCATCAGCTCCATGGATGTCTTCCAGATCACACTGCGCAAAGGCTACCAGATCCAGGACTTCAAG
Seq A exon
ATGGACCTGGCCAGCCTGTGTCTGAAAGCTGGAGTGAAGAATCTCAACACAGTGTTTCTCATGACTGATGCCCAAGTGGCTGATGAGAGGTTCCTTGTGCTCATCAATGATCTTTTGGCATCTG
Seq C2 exon
GGGAGATCCCAGATCTCTACTCTGATGATGAAGTTGAAAACATCATAAGCAATGTGAGGAATGAAGTCAAGAGCCAGGGTCTGGTTGACAACAGAGAGAACTGTTGGAAGTTCTTTATAGATCGGATCCGGCGACAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'83-76,'83-74,85-76=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.1=100)
A:
PF127802=AAA_8=FE(15.3=100)
C2:
PF127802=AAA_8=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTGGTTGGTGTAGGTG
R:
TGTCGCCGGATCCGATCTATA
Band lengths:
258-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains