RnoEX6030092 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145888296-145912252:-
Coord C1 exon
chr6:145912110-145912252
Coord A exon
chr6:145898344-145898505
Coord C2 exon
chr6:145888296-145888529
Length
162 bp
Sequences
Splice sites
3' ss Seq
TCTCACCCTGCTCTCTACAGATG
3' ss Score
10.88
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAGACATCCCAGGTCTGTTCAGTGACGAAGATACCGACAAGATCATTTCTGGGATTCGTAATGAAGTTCGAGGCCTCGGCATAACAGACTCCAGGGAGAACTGTTGGGCATTCTTTTTGGCCAGAGTCCGACTACAGCTCAAA
Seq A exon
ATGGTTTTTTGTTTCTCACCGGTTGGTCACACTCTGAGAGTTAGAGCCCGGAAGTTCCCAGCCCTAGTTAACTGCACAGCTATTGACTGGTTTCATGCATGGCCACAGGAAGCTCTGGTCTCAGTCAGCAGGAGGTTTATTGAAGAAATCGAGGGGATTGAG
Seq C2 exon
CCACAGCACAAAGATTCTATCAGCCTTTTCATGGCGTATGTTCACACCAGTGTAAAGGAAGTAAGTGCCTGGTACTACCAGAACGAGAGGAGGTACAACTACACCACCCCAAGGAGTTTCTTAGAACAAATATCACTGTTTAAGAGCCTGCTGAAGAAGAAGCGAGGAGAGGTGCAGCGGAAGAAGGAGCACCTGGGGAATGGAATCCAGAAGCTGCAGACCACGGCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'71-71,'71-70,72-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.5=100)
A:
PF127802=AAA_8=FE(19.8=100)
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGTCCGACTACAGCTCA
R:
GGTCTGCAGCTTCTGGATTCC
Band lengths:
245-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]