MmuALTD0004316-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119233602-119246580:-
Coord C1 exon
chr12:119246438-119246580
Coord A exon
NA
Coord C2 exon
chr12:119233602-119233763
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGA
5' ss Score
4.23
3' ss Seq
GTCCCCCCTCACCCCTACAGATG
3' ss Score
10.21
Exon sequences
Seq C1 exon
GAGACATCCCAGATCTGTTCAGTGATGAAGATATGGACAAGATCATTTCCGGGATTCGTAATGAAGTTCGAGGCCTCGGCTTAGTGGACTCCAGGGAAAACTGTTGGGCATTCTTTTTGGCCAGAGTCCGACAACAGCTCAAA
Seq A exon
NA
Seq C2 exon
ATGGTTTTTTGTTTCTCACCGGTTGGCCACACACTGCGAGTTAGAGCCCGGAAGTTCCCAGCCATAGTTAACTGCACAGCTATTGACTGGTTTCATGAATGGCCACAGGAGGCTCTGGTCTCAGTCAGCAGGAGGTTCATCGAAGAAATTGAGGGGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-54-54,55-54-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.5=100)
A:
NA
C2:
PF127802=AAA_8=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACATCCCAGATCTGTTCAGTGA
R:
CTCAATCCCCTCAATTTCTTCGA
Band lengths:
304-767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: