GgaINT0127378 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1096486-1097559:+
Coord C1 exon
chr18:1096486-1096647
Coord A exon
chr18:1096648-1097325
Coord C2 exon
chr18:1097326-1097559
Length
678 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CCTTCTCATCCCACTTCCAGGCT
3' ss Score
9.9
Exon sequences
Seq C1 exon
GTTGCGTTGTGTTTTTCGCCCGTTGGCAACAAGCTGCGGGTCCGCAGCAGGAGGTTCCCCGCCATCGTGAGCTGCACGGCGATCGATTGGTTCCAGGAGTGGCCACAGGAGGCCCTCGAGTCCGTCAGCCTCCGCTTCCTGCGAGACACGGACAGCGTGGAG
Seq A exon
GTGAGCGCCTCGTCCAGACCTCCCAGAGCAGCGCGGGCCCCCGCAGAAGCAGGGCTGTGGTCATAAGTGTTTATGCACCGATGGTATCGTCAGTGAAATGATTGCCTTGCTGGCCAGAAAGGCCGCTTACAAATCGGTGCAGAAAATAACCCAGCGCTTCTGATTACTCGGGGGAACAAACACCTTTCTCTCCGCATGCGTATCTGTGCCTGTAATTCTCAAGGGCAAAAAGATGTCAAGTTCTCGTTGGTGAGAACCTGCTGCTGGGCTAAGGGAGAGGCGGTTCTGTTTGTTTGGTTTTTCAGGACAGGGTTTGGGAAGAATAAAATCTACAGTATTTCTTTTTATGTGTGTGCACTTTCCCATTTGTACAGAAGAAAAGCTCAAATTTCTACTTAAAAGGCTGTAATTTTGATGGAGTTGAATGCTAGAAAAATTGCTTGGAATAAGATGAAGTATGAGATAAAAAAGATATAAAAAGAGGTATAAAGTGCACGAGCAGATGAAGTTATTTTAGAGATAACAAAATGAAAAGGGATCAACTCGGATGTTCCGTCCTGGATTTTGCTGCAGCAGAATAAAACGTTAATAAATTCCTTTATATATGGCACAGGTCTGCGTGATATATGGTTGTTCTGCTTGAAATGTTTTCTCTTTGCCTTCTCATCCCACTTCCAG
Seq C2 exon
GCTCCAGTGAAAGAGTCAATAAGCAAATTCATGGCCTATGTCCACACAAGTGTCAACGAGATGTCCCAACTGTACCTGAGCAACGAGCGGCGGTACAACTACACCACCCCCAAATCATTCCTCGAGCAGATCAAACTCTATCAGAATTTGCTACTGAAAAAGAGAAAGGATTTAACAGCAAAAATGGAGAGGCTGGAGAATGGCCTGGAGAAGCTCAACAGTACATCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
NA
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTGTTTTTCGCCCGTTGG
R:
TCCAGCCTCTCCATTTTTGCT
Band lengths:
354-1032
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]