HsaINT0050084 @ hg19
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11725755-11726351:+
Coord C1 exon
chr17:11725755-11725916
Coord A exon
chr17:11725917-11726117
Coord C2 exon
chr17:11726118-11726351
Length
201 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTCTTGCTCTTTGGTTTTAGCCC
3' ss Score
8.39
Exon sequences
Seq C1 exon
GTGACTCTCTGTTTCTCCCCTGTGGGAAACAAGCTAAGAGTCCGCAGCAGGAAGTTCCCAGCCATTGTGAACTGCACAGCCATCCACTGGTTCCACGAGTGGCCTCAGCAAGCATTGGAGTCTGTCAGCCTCCGCTTCTTGCAGAACACAGAGGGCATTGAG
Seq A exon
GTGAGAGAGAAAAGGAGACACTCCTAAAAGTCCTTCCCAGATGAGGGTACAATGAATTCCCTGTCCAGGATGTTAGGGTTAAAGATCAAGCTTGAAGCATAAGTTTCCACATGGTGGAGGAATGGCTGGGGTGAGGGGTGAGCAGTTGCCTCCAATCTTCAACACAAGATAATCTTTTCATTTCTTGCTCTTTGGTTTTAG
Seq C2 exon
CCCACAGTAAAGCAGTCGATTAGCAAATTCATGGCCTTTGTCCACACAAGTGTCAACCAAACATCCCAGTCTTATCTGAGCAATGAACAGCGCTACAACTATACAACTCCCAAGTCCTTTCTGGAGTTCATCAGACTCTACCAGAGCTTGTTGCACAGGCACAGAAAAGAGCTCAAGTGCAAGACAGAGCGGTTGGAGAACGGGCTGCTGAAGCTGCATAGCACCTCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-DNAH9:NM_001372:47
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
NA
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGCTAAGAGTCCGCAGC
R:
AGCTCTTTTCTGTGCCTGTGC
Band lengths:
308-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)